Plant FIBer expression Database

Pt-AERO1.1 (Potri.001G436100) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-AERO1.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G72280 630 / 0 AERO1 endoplasmic reticulum oxidoreductins 1 (.1)
AT2G38960 575 / 0 AERO2 endoplasmic reticulum oxidoreductins 2 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G139900
[exp]
772 / 0 AT1G72280 635 / 0.0 endoplasmic reticulum oxidoreductins 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038515
[exp]
607 / 0 AT1G72280 656 / 0.0 endoplasmic reticulum oxidoreductins 1 (.1)
Lus10023292
[exp]
605 / 0 AT1G72280 658 / 0.0 endoplasmic reticulum oxidoreductins 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04137 ERO1 Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
Representative CDS sequence
>Potri.001G436100.1 pacid=42793746 polypeptide=Potri.001G436100.1.p locus=Potri.001G436100 ID=Potri.001G436100.1.v4.1 annot-version=v4.1
ATGGTGAAGTTCACAAAGAGCTTTAAGCCTAAACAAGAAAACAAGAAAGAGAGAAGGAAATGGAGTTCATGGTGGTTGATTGGGGCGTCACTGGCAGTTG
TATTAGCAGTGATTGCAGCTGGCACTGTGTCTCCGATGAATGCTTCAAAGATTGGTTCTTTGATTAGTAGCAATTACAAGTCATGTCAATGTTCTTCTGC
TCAGGATTCAGGGAAGTATAAGGGAATGATTGAGGATTGTTGTTGTGATTATGAGAGTGTAGATAGTGTTAATGGAGAGGTGTTGCATCCTTTGCTTCAA
GAGCTTGTTACAACACCGTTTTTTCGGTATTTTAAGGTTAAATTGTGGTGTGACTGCCCTTTCTGGCCGGATGATGGTATGTGCCGCCTACGTGATTGCA
GTGTCTGTGAATGCCCAGAAAATGAATTCCCTGAACCTTTTAAGAAGCCATTCCGCCGTGGTCTTCCAGCAGATGATCTGATGTGTCAAGAGGGAAAGCC
ACAGGCTGCTGTTGATCGCACATTAGACAGTAGAGCTTTTAGAGGATGGATAGTGACAGATAATCCATGGACAAATGATGATGAGACTGATAATGGTGAG
CTGACATATGTGAATCTTCTACTGAATCCGGAGCGCTACACTGGTTATGCTGGTTCATCAGCTAGAAGAATATGGGACGCTGTTTACTCAGAGAATTGCC
CAAAATATGCATCTGGAGAGATTTGCCAGGAGAAAAAAGTATTATACAAATTAATATCTGGTCTCCACTCTTCCATTTCAATCCATATAGCTGCTGATTA
TCTTCTTGATGAGAGCACCAATAAGTGGGGTCAGAACCTGGAATTGATGTATGATCGTGTTCTAAGATATCCTGATCGTGTCAGAAACTTGTACTTCACG
TTCCTCTTTGTTTTGCGCGCCATGACTAAAGCAGCAGATTACCTGGAGCAGGCTGAGTATGACACCGGTAACAATACAGAGGACCTAAAGACACAATCTT
TAGTGAGGCAGTTACTTTACAACCCCAAGCTCCAAGCTGCTTGTCCTCTTCCATTTGATGAAGCTAAGTTGTGGCAAGGCCAAAGTGGACCTGAACTGAA
GCAGCAAATTCAAAAGCAATTCAGAAATATTAGTGCATTGATGGACTGTGTTGGCTGTGAGAAGTGTCGACTTTGGGGAAAACTTCAGGTTCTTGGCCTT
GGTACTGCATTGAAGATACTCTTTTCTGTTGATGGTCAAAATCAACCAAGCGAATCTCCGCAACTCCAACGAAATGAAGTGATTGCGCTGGTGAATTTGC
TCAATCGGCTCTCAGAATCTGTCAAATTTGTACGTGAACAGGGTCCTTCAATCGAGAAGATCATGGAAAGACAGATATCAGATTCTTCTGAACCCAAGCA
TGGTAGTAAATGGCAGAGAGCAGGGCAGTCACTGTTTCAGCTTTGGTAA
AA sequence
>Potri.001G436100.1 pacid=42793746 polypeptide=Potri.001G436100.1.p locus=Potri.001G436100 ID=Potri.001G436100.1.v4.1 annot-version=v4.1
MVKFTKSFKPKQENKKERRKWSSWWLIGASLAVVLAVIAAGTVSPMNASKIGSLISSNYKSCQCSSAQDSGKYKGMIEDCCCDYESVDSVNGEVLHPLLQ
ELVTTPFFRYFKVKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPFRRGLPADDLMCQEGKPQAAVDRTLDSRAFRGWIVTDNPWTNDDETDNGE
LTYVNLLLNPERYTGYAGSSARRIWDAVYSENCPKYASGEICQEKKVLYKLISGLHSSISIHIAADYLLDESTNKWGQNLELMYDRVLRYPDRVRNLYFT
FLFVLRAMTKAADYLEQAEYDTGNNTEDLKTQSLVRQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQKQFRNISALMDCVGCEKCRLWGKLQVLGL
GTALKILFSVDGQNQPSESPQLQRNEVIALVNLLNRLSESVKFVREQGPSIEKIMERQISDSSEPKHGSKWQRAGQSLFQLW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G72280 AERO1 endoplasmic reticulum oxidored... Potri.001G436100
[exp]
0 1 Pt-AERO1.1
AT3G02020 AK3 aspartate kinase 3 (.1) Potri.002G236800
[exp]
1.41 0.7284
Potri.018G013850
[exp]
12.60 0.7246
AT1G61340 F-box family protein (.1.2) Potri.004G034400
[exp]
13.26 0.7152
AT5G13500 unknown protein Potri.009G070000
[exp]
17.49 0.6259
AT3G61760 ADL1B DYNAMIN-like 1B (.1) Potri.002G171200
[exp]
22.47 0.7043
Potri.018G013875
[exp]
23.21 0.6904
AT2G15910 CSL zinc finger domain-contain... Potri.009G109100
[exp]
29.66 0.6534
AT1G71990 ATFT4, ATFUT13,... ARABIDOPSIS FUCOSYLTRANSFERASE... Potri.019G082200
[exp]
29.66 0.5402
AT3G52105 unknown protein Potri.001G267501
[exp]
30.03 0.6196
AT1G15400 unknown protein Potri.001G172100
[exp]
31.17 0.6768

Potri.001G436100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.