Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72250 1176 / 0 Di-glucose binding protein with Kinesin motor domain (.1.2) AT2G22610 710 / 0 Di-glucose binding protein with Kinesin motor domain (.1.2) AT5G27550 524 / 8e-171 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G47500 354 / 1e-104 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G73860 345 / 3e-101 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G27000 344 / 4e-101 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT5G41310 330 / 2e-96 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G54670 325 / 3e-96 KATC, ATK3 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) AT4G27180 316 / 4e-93 KATB, ATK2 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA B, kinesin 2 (.1) AT3G44730 323 / 5e-93 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G140000 [exp] 2077 / 0 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.002G110600 [exp] 749 / 0 AT2G22610 1057 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.005G030271 [exp] 527 / 6e-172 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G020700 [exp] 523 / 2e-170 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G011500 [exp] 349 / 1e-102 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.001G467600 [exp] 346 / 7e-101 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.005G021100 [exp] 342 / 4e-100 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.002G201000 [exp] 339 / 3e-99 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.011G165200 [exp] 340 / 1e-98 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005582 [exp] 1377 / 0 AT1G72250 1109 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10013714 [exp] 1364 / 0 AT1G72250 1098 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10035954 [exp] 738 / 0 AT2G22610 1302 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10025708 [exp] 701 / 0 AT2G22610 1238 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10004487 [exp] 508 / 6e-164 AT5G27550 881 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029914 [exp] 504 / 1e-162 AT5G27550 905 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029865 [exp] 352 / 1e-103 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10015212 [exp] 343 / 2e-101 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10009851 [exp] 335 / 6e-98 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10032897 [exp] 338 / 7e-98 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.001G436200.8 pacid=42792003 polypeptide=Potri.001G436200.8.p locus=Potri.001G436200 ID=Potri.001G436200.8.v4.1 annot-version=v4.1 ATGGAAGATAGTGATACTTCATATGAACAACAGCAACTTAATCAACGGCAAGACCCACTTCTCCTTACTGATGTTTCTTGGCAGCAACAACAACAAAACA GCAGCTCTCTTTCTTACTCGCAGTATACTCAACCCATTTCATCAAAGTTTCAATCTTTGACCATGGTAGATTCAATTTCTTTTCCTAATTCAAATGAAGT AGATATGTATTGGCAAGAAACGCAAAGCTTAGAATCAATTTCTACGCAAAAAATCATACATCCAGTTGAGAATGATACAATTGAGGGTAGGTCCGTGATA GGGTTTTCTTTAACATCTCCTGATCTGGTTATTTGTGCTGCTTCACCTGATATATCAAGAACTGGATATGGAGATTCTCCTGATTTCATGGATAAAAACA AATGTTCAATTGAGGTTTCTTTAGAGAATGGTATTGATGGGTCTGGTATCAAAGACTCCAGTAAGACTCCATGTGTAAAGTTCTCTCCAGTATTTCAAAC ATTCAACAAAGAATTGTCTCCTGAATCTTCATTTGAGCTCCTTCCACAGACAGAGAAAGAAGAGAAATTGGTGAAGGTTTTCGTTCCTGGTGTAAGCATC AATGCAGGATGCACTGGTGGGGCTGTGTTTTTGGGTGGTGTAGAGTTTGTTGAGGATGATTGTTTTGCAGGTGGTGATACTGTAAGGACTGATGCTACAA TTGGGGATGGACAGGATGGGGGTCTTTCTCTTTACCAAACAGCTCGTTATGGTAACTTCTCGTATTGTTTCCGAGGACTGGAGCCTGGGACTTATGACGT TAGTCTGCACCTTGCAGAAATTGTATTCACCGAGGGGCCTCCTGGGCTAAGAGTATTTGATGTTTTTATACATGAGAAGAAGGTTGTCTCATGCCTAGAC ATATATGCACAAGTAGGTGCAAATAAACCTCTGGTTGTATCTGACCTTAAAGCTTTCGTTGAGGGTGATGAGGGCTTATTGATTAGATTTGAAGGGGTGA TGGGAAAACCAATTGTATGTGGGATTTCTGTTACAAAAGATTCTTCTGCTCATACTGGAGAAGCTCAATTACTAAAACCTGTGGAAATGTCCCAAGTAGC AGAATGCGAATCACCAAAAGAGGATAATGGTCACCTTCAAGTGGAAGGGGATTATGAGAAGCTACTGAGAGATTATGAGTGTCAGAGAAGGGAATTAACG GAAATGAGGAGGACAATGGACGAACTTAAGAGGGAAAACCGACTTAAGAGCAGGGAATGCCAAGATGCTTTGAAGTCTTTACAGGAGCTCCAGAATGAGC TCATGCGCAAGTCAATGCATGTTGGGTCCTTGGCCTTTGCCATTGAGGGACAAGTGAAAGAGAAGAGCAGGTGGTTCACATCATTGAGAGACTTGACAAG AAAACTGAAGCTTATGAAAATGGAGCACATCAAGTTATCAGAGGAGGCACTGGCATACAAGAATTGTGTTGCAGATATGGAAGATATGAGGTTTACTATT GTGTCCACAATGAAGCAGCAAGTAGAATTGCATGAGGATATTAAGATTAAATTTGTTGAAGGAGCCAAGGAAAGAAAGGAACTGTACAATAAGGTTCTCG AGTTGAAAGGAAACATACGAGTGTTTTGCCGATGTCGACCTCTAAAACCTGAAGAAGTAGCAGCAGGAGCTTTAGTGACTATTGATTTTGAATCTGCTAA AGATGGTGAGCTCACAGTTATGTCCAATGGGCTTCCAAGAAAGACGTTCAAGTTTGATGCTGTTTTTGGTCCCCAAGCAAACCAAGCTGATGTTTTTGAA GACACTGCTTCATTTGCTAGCTCAATTTTGGATGGGTACAATGTCTGTGTTTTTGCATATGGACAAACCGGGACTGGAAAAACTTTTACAATGGAGGGTA CCGAAGAAGATCGTGGAGTAAATTTTAGGACACTTGAACAAGTTTTTTGTATGATTAAGGAGCGAGAGGAGCTGTTTCGATACGATGTATCTGTAAGTGT TCTGGAAGTTTATAACGAGCAAATACGAGATTTACTGGTCTCGGACTCTCAGCCAGGTGTGGCTGCAAAGAGGCTGGAAATAAGGCAAGCTGGTGAGGGA CTACATCATGTCCCAGGGCTGGTTGAAGCACGTGTACACAACATGAGTGAGGTTTGGGAAGTTCTACAAACTGGTAGTAATGCAAGAGCAATTGGCTCTA CCAATGCCAATGAGCACAGCAGCCGATCCCACTGTATACATTGTGTTATGGTAAAGGGAGAGAATTTATTGAACGGGGAATGCACAAAGAACAAGTTATG GTTGGTTGACCTAGCAGGAAGTGAGAGGATATCAAAAACAGAAGTGCAAGGAGAGCGGCTCAGGGAAACTCAAAATATCAATAAATCCTTATCTGCACTT GGTGATGTCATATCTGCTCTTGCAACTAAAAGCCCTCACATCCCATTCAGGAATTCCAAGCTCACCCATCTGCTTCAAGATTCCCTGGGAGGAGATTCGA AGACATTCATGTTTGTACAGATCAGTCCCAATGAGAATGACCTTGGTGAAACTCTATGCTCGCTGAATTTTGCTAGCAGAGTTAGAGGGATAGAGCTGGG TCCTGCAAAGAGACAGTTGGACAATGCTGAACTTCTGAGATACAAACAGATGTCTGAGAAATCAAAGCAAGATTTGAAAAGCAAAGATGTGCAAATAAAG AAGATGGAGGATACAATCAATGGTTTGGACTTGAAGACAAAAGAAAAGGACCTTAAATATATGATGTTGCAAGATAAGGTTAAGGAGCTGGAGGCACAGC TACTAGTTGAAAGGAAGCTGGCACGTCAGCATGTGGACACAAAGATTGCTGAGCAGCAACAGCAACAGCAAATGAAACAGCAGCAAGCTGAACATATCAT TGCACCACCTAGGCCACCACTTCCAAATCGAATATTAGGGAGTAACTGGATTTATAATGAACCTGCAAACGGTGCATTGAACAAACAACAGATAAATCCC ACTCAGCCACTTGCGGGGAACACCAGCAACAAATCCACCATCCCCCTTCCCTCCACAGATGGGATTGTCAAGTTGATTGATTCTACTGAAAAAGAAAACA ACCCTGACATGGCTAACCAACCACGATTGCCAAAGAGGACTGGCAGAGCCTCAATTTGCACAACAGCAGGACAGGTCCTAGCAGCCCCAGCTCCAAGGCG TAACTCAATGATTCCACTCCCAAGCATACCGAGTTTAGTTCAACTCCCAAGTATACCAAGTTCATTTCTATTATGCCAAGTGGATATGAAACAAGATTTA GAAGGGACTGAAACAAACTGTTTGCACAAGCAGACACATTGCGACAGCCCTAAAGGAATCAGAAATGGCTCCAAGAGACTAAACACCATGTTGAAACGAA GTCTTCAAAAGAAAGCTAACATGAAGTCCCCAATGCAGCAACATACGAGAAGAGGCGGTATAAATGTTGGGATGGAGAAAGTTAGAGTCTCTATTGGAAG TCGAGGCAGGATGGCACATAGGGTATTGCTAGGGAATGGCAGAAGAGCAGGAATGAGGGAAACTCACCAGAAGCAGATGCTAGGAGAAAAGGAAAGGAGG TGGAATAGTGGAACAGTGGCAAGAACTCCAATCTAA
AA sequence Show only first row Show all	>Potri.001G436200.8 pacid=42792003 polypeptide=Potri.001G436200.8.p locus=Potri.001G436200 ID=Potri.001G436200.8.v4.1 annot-version=v4.1 MEDSDTSYEQQQLNQRQDPLLLTDVSWQQQQQNSSSLSYSQYTQPISSKFQSLTMVDSISFPNSNEVDMYWQETQSLESISTQKIIHPVENDTIEGRSVI GFSLTSPDLVICAASPDISRTGYGDSPDFMDKNKCSIEVSLENGIDGSGIKDSSKTPCVKFSPVFQTFNKELSPESSFELLPQTEKEEKLVKVFVPGVSI NAGCTGGAVFLGGVEFVEDDCFAGGDTVRTDATIGDGQDGGLSLYQTARYGNFSYCFRGLEPGTYDVSLHLAEIVFTEGPPGLRVFDVFIHEKKVVSCLD IYAQVGANKPLVVSDLKAFVEGDEGLLIRFEGVMGKPIVCGISVTKDSSAHTGEAQLLKPVEMSQVAECESPKEDNGHLQVEGDYEKLLRDYECQRRELT EMRRTMDELKRENRLKSRECQDALKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFTSLRDLTRKLKLMKMEHIKLSEEALAYKNCVADMEDMRFTI VSTMKQQVELHEDIKIKFVEGAKERKELYNKVLELKGNIRVFCRCRPLKPEEVAAGALVTIDFESAKDGELTVMSNGLPRKTFKFDAVFGPQANQADVFE DTASFASSILDGYNVCVFAYGQTGTGKTFTMEGTEEDRGVNFRTLEQVFCMIKEREELFRYDVSVSVLEVYNEQIRDLLVSDSQPGVAAKRLEIRQAGEG LHHVPGLVEARVHNMSEVWEVLQTGSNARAIGSTNANEHSSRSHCIHCVMVKGENLLNGECTKNKLWLVDLAGSERISKTEVQGERLRETQNINKSLSAL GDVISALATKSPHIPFRNSKLTHLLQDSLGGDSKTFMFVQISPNENDLGETLCSLNFASRVRGIELGPAKRQLDNAELLRYKQMSEKSKQDLKSKDVQIK KMEDTINGLDLKTKEKDLKYMMLQDKVKELEAQLLVERKLARQHVDTKIAEQQQQQQMKQQQAEHIIAPPRPPLPNRILGSNWIYNEPANGALNKQQINP TQPLAGNTSNKSTIPLPSTDGIVKLIDSTEKENNPDMANQPRLPKRTGRASICTTAGQVLAAPAPRRNSMIPLPSIPSLVQLPSIPSSFLLCQVDMKQDL EGTETNCLHKQTHCDSPKGIRNGSKRLNTMLKRSLQKKANMKSPMQQHTRRGGINVGMEKVRVSIGSRGRMAHRVLLGNGRRAGMRETHQKQMLGEKERR WNSGTVARTPI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72250			Di-glucose binding protein wit...		Potri.001G436200 [exp]	0	1
AT3G10310			P-loop nucleoside triphosphate...		Potri.006G048600 [exp]	1.41	0.9854
AT5G60930			P-loop containing nucleoside t...		Potri.002G106000 [exp]	4.00	0.9730
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Potri.012G054400 [exp]	4.47	0.9705
AT1G72250			Di-glucose binding protein wit...		Potri.011G140000 [exp]	4.58	0.9663
AT3G20150			Kinesin motor family protein (...		Potri.001G360200 [exp]	4.89	0.9750
AT2G26180		IQD6	IQ-domain 6 (.1)		Potri.018G062001 [exp]	4.89	0.9613
AT5G60930			P-loop containing nucleoside t...		Potri.005G150800 [exp]	6.32	0.9633
AT1G80370		CYCA2;4	Cyclin A2;4 (.1)		Potri.001G177100 [exp]	7.34	0.9695
AT3G15550			unknown protein		Potri.001G175500 [exp]	9.94	0.9648
AT4G14330			P-loop containing nucleoside t...		Potri.010G069400 [exp]	10.19	0.9657

Compare expression of checked genes

Potri.001G436200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.