Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17220 1075 / 0 FUG1 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) AT4G11160 333 / 1e-100 Translation initiation factor 2, small GTP-binding protein (.1) AT1G76820 100 / 3e-21 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G21160 99 / 6e-21 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G76810 99 / 9e-21 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G76720 88 / 3e-17 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT2G27700 82 / 4e-16 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein (.1.2) AT5G13650 65 / 2e-10 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT5G08650 61 / 4e-09 Small GTP-binding protein (.1) AT5G39900 54 / 5e-07 Small GTP-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G140100 [exp] 1447 / 0 AT1G17220 1160 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Potri.001G095500 [exp] 328 / 8e-99 AT4G11160 828 / 0.0 Translation initiation factor 2, small GTP-binding protein (.1) Potri.012G039200 [exp] 101 / 2e-21 AT1G76810 1096 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.019G103600 [exp] 96 / 8e-20 AT1G76810 976 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.006G053000 [exp] 66 / 1e-10 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.001G305300 [exp] 60 / 9e-09 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.002G215900 [exp] 56 / 8e-08 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.014G138100 [exp] 56 / 1e-07 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.017G079800 [exp] 54 / 5e-07 AT5G39900 999 / 0.0 Small GTP-binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013713 [exp] 1097 / 0 AT1G17220 1267 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Lus10005581 [exp] 991 / 0 AT1G17220 1080 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Lus10033933 [exp] 304 / 7e-90 AT4G11160 927 / 0.0 Translation initiation factor 2, small GTP-binding protein (.1) Lus10012856 [exp] 96 / 1e-19 AT1G76820 1211 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10030500 [exp] 95 / 2e-19 AT1G76810 1217 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10023474 [exp] 70 / 5e-14 AT1G76810 224 / 5e-69 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10035968 [exp] 67 / 5e-11 AT5G08650 1102 / 0.0 Small GTP-binding protein (.1) Lus10012200 [exp] 62 / 3e-09 AT5G13650 1019 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10007535 [exp] 61 / 4e-09 AT5G13650 1121 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10015364 [exp] 59 / 2e-08 AT5G39900 1082 / 0.0 Small GTP-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase CL0123 [poplar] [flax] HTH PF04760 [poplar] [flax] IF2_N Translation initiation factor IF-2, N-terminal region CL0123 [poplar] [flax] PF11987 [poplar] [flax] IF-2 Translation-initiation factor 2
Representative CDS sequence Show only first row Show all	>Potri.001G436300.4 pacid=42790375 polypeptide=Potri.001G436300.4.p locus=Potri.001G436300 ID=Potri.001G436300.4.v4.1 annot-version=v4.1 ATGGGGTCCATGGTGGTTTTAGTAGGTAGTATGCCATCTTTGGCTTCCCTTGTTAGTTTAGGAAGCTTGAGTGGGTCTACAGCTACTTCTAGTTGTGTTG AATCTTCTTCGTATTCAGTTGTGAAGAGAGTTTCTTTATCAAAAAGGAGTCTTAGGAGGGCTAAAAGTTGGCATTGTGTGTGTAAATATTCAGTTACTGC CACTGATTTCATTGCTGAGCAAGGCAATGCTGTATCACTTGATTCTAGTAGTAATGGTGATGGTAATGATGGTGATAGTGGGGTTGTACTTAAACCTAGT CCAAAGCCCGTGTTAAAATCGCCGGCTGGTTCCAAGGATGAAACCCTTTTGAGTATGAATTCTGTTGGGTGGGGTTCTTCAAGGGGTAGTGGGGATTCTG ATGAGGAAGAAGAGAGGAATAAGGTGATCGAGTCACTTGATGAGGTCTTGGAGAAGGCTGGAAAGCTTGAAACTTCAAAACAAAGCCAAGTGGGTGCGAG TGCTGGTAGTATTAGGAAAGAGAATGGGAATGTAAATAAAATGACACCATCTAATTCATATACTGATTCGAGAAATGTTAATTCCACGGCTGCTACTCGT AAAGCTAAAACTTTGAGAAGTGTGTGGCGGAAAGGAGACACGGTGTCTTCAGTGCAGAGGATTGTCAAGGAAGTTCCGAAGGCTAGTAACAAGTTTATCA AGGAGGAACCTAAAACAGTAGAAGGGACAAAGCTAGAATCTCAATCACGTGTTCCACTGAAACCTCCTCAGCCACCTCTAAGACCTCAACCAAAGTTACA GGCCAAGCCATCCGCAGCTCCTTCACCTATCATTAAGAAACCTGTTGTTTTGAAGGATGTGGGGGCTGCTCCAAAGTCACCAATTAAAGATGAAACAGGC TCAGGTGCTGCACAAAGTAAAGGACAGCCAATTTTGATTGACAAATTTGCTCGCAAGAAACCGGTTGTCGATCCCGTAATTGCACAGGCTGTTTTAGCTC CTACTAAACCAGGAAAGGGCCCTGCTCCTGGGAAGTACAAAGACCGAAAGAAAGGTGCTTCACCTGGAACACCAAGAAGGCGGATGATGGACAATGATGT TGAGATTCCCGATGAGGAGCTCAATGTTTCTATTCCTGGTGCAGCTACTGCGAGAAAAGGGAGGAAATGGACCAAAGCCAGTAGGAAGGCGGCTAAGATC CAGGCTGCCAGAGATGCAGCTCCTGTCAAAGTAGAGATTTTGGAGGTTGGGGAAAAAGGCATGTCAATCGAAGAGCTAGCCTACAACTTGACCATGGGTG AAGGTGAAATTCTTGGGCTTCTGTTCTCAAAGGGGATTAAGCCTGATGGGGTGCAAACTTTGGACAAAGAGATGGTAAAGATGATATGTAAGGAGTATGA GGTGGAAGTCATAGATGCTGATCCAGTTAGATTTGAAGAAATGGCAAAAAAGAACGAGATTCTTGATGAAGATGATCTGGACAAACTACAAGAGAGGCCT CCTGTGCTTACTATAATGGGTCATGTAGATCATGGCAAGACAACCCTGTTGGATCATATTCGTAAAAGCAAGGTGGCTGCCTCAGAAGCTGGTGGGATTA CACAAGGAATCGGAGCATATAAAGTTATGGTACCTGTGGATGGCAAGTTGCAACCATGTGTTTTCCTTGACACTCCTGGGCATGAGGCATTTGGAGCAAT GAGAGCCCGTGGAGCAAGGGTGACTGACATTGCTATTATTGTGGTGGCTGCTGATGATGGGATTCGTCCCCAGACAAATGAGGCCATAGCTCATGCCAAA GCAGCTGGAGTACCCATTGTGATTGCGATAAATAAGATAGATAAAGATGGAGCTAATCCAGAAAGAGTTATGCAAGAGCTTTCTTCAATTGGCCTCATGC CAGAGGACTGGGGTGGTGATGTCCCAATGGTTCAGGTCAGTGCTCTCAAGGGGGAAAATATAGATGATTTGTTGGAAACTGTTATGCTTGTTGCAGAGTT ACAAGAATTGAAAGCTAATCCAGATAGAAATGCAAAGGGTACAGTTATTGAGGCGGGCCTTGATAAATCTAAAGGACCAATAGCTACTTTTATTGTACAG AAAGGCACATTGAAAAGAGGGGATGTAGTGGTTTGTGGAGAAGCCTTTGGAAAGGTTCGGGCTTTATTTGAAGGTGGTGGAAAACGGGTTGATCAAGTGG GACCGTCTATACCTGTACAGGTTATTGGTTTGAGTAATGTACCAATTGCTGGTGATGAATTTGAGGTTGTTGCCTCCCTTGATATTGCACGTGAAAAGGC AGAGGCACGTGCAGAATTATTATGGAATGAACGTATATCTGCTAAGGCTGGGGATGGGAAGGTGACCCTTTCTTCCTTAGCCTCAGCTGTTTCAGCAGGA AAGCTATCTGGATTAGACTTGCACCAGCTGAATATAATAATGAAAGTCGATCTTCAGGGATCTATGGAAGCTGTCAGGCAAGCCTTACAAGTACTCCCTC GAGATAATGTGACTTTGAAGTTCCTCTTGCAAGCAACAGGAGATGTAAGCAACAGTGATGTTGATCTTGCTGTTGTGAGTGAAGCCATTATTTTAGGATT CAATGTCAAAGCTCCTGGTTCTGTAAAAAGTTATGCAGAAAAAAAAGGTGTTGAGATTCGGCTATATAGAGTTATTTATGAACTAATTGATGAAGTGCGG AATGCTATGGAAGGACTTCTGGAACTTGTTGAGGAACAAGAACCAATTGGCTCAACGGTAGTCCGGGCAGTATTTAGCAGCGGCAGTGGTCGTGTTGCTG GATGCATGGTGACAGAAGGCAAAGTAATAAAAGGCTGTGGCATCAGGGTTGTCAGAAATAGAAAAACAGTCCATGTTGGTGTCCTTGATTCTTTGAGACG TGTTAAGGAAATAGTGAAGGAGGTAAATGCTGGACTAGAGTGTGGTATTGGGGCAGAAGATTACGATGACTGGGAGGAAGGTGATATTATTGAGGCCTTC AACACAGTAGAGAAGAAGCGAACCCTTGAAGAGGCATCAGCTTCCATGGCAGCTGCAATGGAAGAAGTAGGCTTATAG
AA sequence Show only first row Show all	>Potri.001G436300.4 pacid=42790375 polypeptide=Potri.001G436300.4.p locus=Potri.001G436300 ID=Potri.001G436300.4.v4.1 annot-version=v4.1 MGSMVVLVGSMPSLASLVSLGSLSGSTATSSCVESSSYSVVKRVSLSKRSLRRAKSWHCVCKYSVTATDFIAEQGNAVSLDSSSNGDGNDGDSGVVLKPS PKPVLKSPAGSKDETLLSMNSVGWGSSRGSGDSDEEEERNKVIESLDEVLEKAGKLETSKQSQVGASAGSIRKENGNVNKMTPSNSYTDSRNVNSTAATR KAKTLRSVWRKGDTVSSVQRIVKEVPKASNKFIKEEPKTVEGTKLESQSRVPLKPPQPPLRPQPKLQAKPSAAPSPIIKKPVVLKDVGAAPKSPIKDETG SGAAQSKGQPILIDKFARKKPVVDPVIAQAVLAPTKPGKGPAPGKYKDRKKGASPGTPRRRMMDNDVEIPDEELNVSIPGAATARKGRKWTKASRKAAKI QAARDAAPVKVEILEVGEKGMSIEELAYNLTMGEGEILGLLFSKGIKPDGVQTLDKEMVKMICKEYEVEVIDADPVRFEEMAKKNEILDEDDLDKLQERP PVLTIMGHVDHGKTTLLDHIRKSKVAASEAGGITQGIGAYKVMVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAIIVVAADDGIRPQTNEAIAHAK AAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDVPMVQVSALKGENIDDLLETVMLVAELQELKANPDRNAKGTVIEAGLDKSKGPIATFIVQ KGTLKRGDVVVCGEAFGKVRALFEGGGKRVDQVGPSIPVQVIGLSNVPIAGDEFEVVASLDIAREKAEARAELLWNERISAKAGDGKVTLSSLASAVSAG KLSGLDLHQLNIIMKVDLQGSMEAVRQALQVLPRDNVTLKFLLQATGDVSNSDVDLAVVSEAIILGFNVKAPGSVKSYAEKKGVEIRLYRVIYELIDEVR NAMEGLLELVEEQEPIGSTVVRAVFSSGSGRVAGCMVTEGKVIKGCGIRVVRNRKTVHVGVLDSLRRVKEIVKEVNAGLECGIGAEDYDDWEEGDIIEAF NTVEKKRTLEEASASMAAAMEEVGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Potri.001G436300 [exp]	0	1
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Potri.011G140100 [exp]	2.44	0.9754
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Potri.010G027800 [exp]	4.58	0.9716
AT5G17520		MEX1, RCP1	MALTOSE EXCESS 1, root cap 1 (...		Potri.013G076100 [exp]	6.63	0.9458
AT1G23200			Plant invertase/pectin methyle...		Potri.010G109400 [exp]	8.24	0.9503	PE6.1
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Potri.014G126700 [exp]	8.36	0.9581	RSH1.2
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Potri.018G076600 [exp]	9.59	0.9673	Pt-HCF101.1
AT1G30860			RING/U-box superfamily protein...		Potri.001G074800 [exp]	10.19	0.9430
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Potri.019G091300 [exp]	10.24	0.9519
AT5G08650			Small GTP-binding protein (.1)		Potri.001G305300 [exp]	10.24	0.9645
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Potri.014G162200 [exp]	12.24	0.9597

Compare expression of checked genes

Potri.001G436300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.