Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17200 244 / 3e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) AT3G14380 170 / 2e-53 Uncharacterised protein family (UPF0497) (.1) AT5G54980 100 / 7e-26 Uncharacterised protein family (UPF0497) (.1) AT4G16442 76 / 1e-16 Uncharacterised protein family (UPF0497) (.1) AT2G35760 67 / 2e-13 Uncharacterised protein family (UPF0497) (.1) AT2G27370 59 / 2e-10 CASP3 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) AT4G15630 57 / 5e-10 Uncharacterised protein family (UPF0497) (.1) AT4G15620 56 / 1e-09 Uncharacterised protein family (UPF0497) (.1) AT1G14160 56 / 3e-09 Uncharacterised protein family (UPF0497) (.1) AT1G03700 54 / 6e-09 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G140200 [exp] 339 / 7e-120 AT1G17200 223 / 3e-74 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.010G208300 [exp] 108 / 1e-29 AT5G54980 176 / 2e-56 Uncharacterised protein family (UPF0497) (.1) Potri.006G016900 [exp] 74 / 3e-16 AT2G35760 250 / 4e-85 Uncharacterised protein family (UPF0497) (.1) Potri.017G062100 [exp] 74 / 4e-16 AT4G25040 82 / 6e-20 Uncharacterised protein family (UPF0497) (.1) Potri.001G323700 [exp] 73 / 1e-15 AT4G15620 75 / 8e-17 Uncharacterised protein family (UPF0497) (.1) Potri.016G008800 [exp] 72 / 3e-15 AT2G35760 253 / 2e-86 Uncharacterised protein family (UPF0497) (.1) Potri.008G052451 [exp] 69 / 3e-15 AT5G54980 88 / 2e-23 Uncharacterised protein family (UPF0497) (.1) Potri.016G075400 [exp] 62 / 1e-11 AT5G06200 179 / 2e-57 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.006G208800 [exp] 59 / 2e-10 AT5G06200 201 / 7e-66 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026196 [exp] 254 / 4e-86 AT1G17200 241 / 1e-81 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Lus10042471 [exp] 251 / 6e-85 AT1G17200 242 / 6e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Lus10021788 [exp] 97 / 6e-25 AT5G54980 177 / 6e-57 Uncharacterised protein family (UPF0497) (.1) Lus10034604 [exp] 95 / 6e-24 AT5G54980 176 / 1e-56 Uncharacterised protein family (UPF0497) (.1) Lus10005154 [exp] 74 / 5e-16 AT3G55390 233 / 2e-78 Uncharacterised protein family (UPF0497) (.1) Lus10001709 [exp] 67 / 3e-13 AT3G55390 231 / 1e-77 Uncharacterised protein family (UPF0497) (.1) Lus10035168 [exp] 65 / 1e-12 AT4G15620 78 / 8e-18 Uncharacterised protein family (UPF0497) (.1) Lus10012562 [exp] 64 / 4e-12 AT4G15620 77 / 1e-17 Uncharacterised protein family (UPF0497) (.1) Lus10031998 [exp] 63 / 5e-12 AT4G15620 80 / 1e-18 Uncharacterised protein family (UPF0497) (.1) Lus10037160 [exp] 58 / 5e-10 AT1G14160 214 / 9e-71 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [poplar] [flax] Marvel-like PF04535 [poplar] [flax] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Potri.001G436400.1 pacid=42788480 polypeptide=Potri.001G436400.1.p locus=Potri.001G436400 ID=Potri.001G436400.1.v4.1 annot-version=v4.1 ATGGAGAAGAAGGACGAAGGAAATCCTCCAATGGCAGTGATGGGGTCAAGAGACGAGAATGAAGATGTGAAAAGCACCATGCGCACAGCTGAGACTATGT TGCGTTTGGTGCCTGTGGCTTTGTGTGTCTCAGCACTTGTTGTCATGCTTAAGAATACTCAAACTAATGACTATGGATCCCTTTCTTATTCAGATCTTGG AGCTTTCAGGTATTTGGTGAATGCCAATGGCATCTGTGCTGGTTATTCCCTTCTTTCAGCTGTCATTGTAGCCATGCCTCGAGCATGGACAATGCCTCAA GCATGGACTTTTTTCTTACTCGACCAGGTGTTAACGTATGTGATTCTGGCTGCCGGAACAGTGTCGACGGAGGTATTATACTTGGCAAACAAGGGAGACA CATCCATCGCTTGGAGCGCAGCTTGTGCGTCGTTTGGTGGATTTTGTCACAAGGCCTTGATATCCACAGTCATTACATTCGTTGCAGTAATCTTCTACGC AGCTCTCTCGCTCGTCTCTTCCTACAAGCTTTTCAGCAAATATGATGCGCCAGTTGTGACCCAATCAGGCGAGGGTATTAAGACTGTCACCCTCGGTTCA CCACCACCACCACCACCACCACCACCAAGCAACCTCCACCTCCATCTCCATGCGAAGCTAGCATGTCCTGCCCACAATAACAGCCCAAATTAG
AA sequence Show only first row Show all	>Potri.001G436400.1 pacid=42788480 polypeptide=Potri.001G436400.1.p locus=Potri.001G436400 ID=Potri.001G436400.1.v4.1 annot-version=v4.1 MEKKDEGNPPMAVMGSRDENEDVKSTMRTAETMLRLVPVALCVSALVVMLKNTQTNDYGSLSYSDLGAFRYLVNANGICAGYSLLSAVIVAMPRAWTMPQ AWTFFLLDQVLTYVILAAGTVSTEVLYLANKGDTSIAWSAACASFGGFCHKALISTVITFVAVIFYAALSLVSSYKLFSKYDAPVVTQSGEGIKTVTLGS PPPPPPPPPSNLHLHLHAKLACPAHNNSPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17200			Uncharacterised protein family...		Potri.001G436400 [exp]	0	1
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.013G143900 [exp]	2.00	0.8531	FGT1
AT2G46300			Late embryogenesis abundant (L...		Potri.002G167300 [exp]	2.44	0.8188
AT5G18590			Galactose oxidase/kelch repeat...		Potri.008G214900 [exp]	4.69	0.7841
AT3G22750			Protein kinase superfamily pro...		Potri.008G156000 [exp]	6.32	0.7900
AT1G01630			Sec14p-like phosphatidylinosit...		Potri.001G068000 [exp]	7.93	0.7879
AT3G52740			unknown protein		Potri.009G164000 [exp]	8.71	0.7409
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Potri.001G105600 [exp]	8.83	0.7524	ATGSTT1.3
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Potri.007G144600 [exp]	12.16	0.8101
AT5G19290			alpha/beta-Hydrolases superfam...		Potri.008G040000 [exp]	15.87	0.7704
AT5G11190	AP2_ERF	SHN2, SHN3	shine2, Integrase-type DNA-bin...		Potri.006G253800 [exp]	26.83	0.7214

Compare expression of checked genes

Potri.001G436400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.