Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32660 306 / 3e-96 AtRLP22 receptor like protein 22 (.1) AT2G25440 301 / 4e-93 AtRLP20 receptor like protein 20 (.1) AT2G33060 301 / 8e-92 AtRLP27 receptor like protein 27 (.1) AT2G33020 300 / 6e-91 AtRLP24 receptor like protein 24 (.1) AT3G25020 297 / 6e-90 AtRLP42 receptor like protein 42 (.1) AT2G33050 293 / 4e-89 AtRLP26 receptor like protein 26 (.1) AT3G11010 294 / 1e-88 AtRLP34 receptor like protein 34 (.1) AT3G05660 288 / 1e-86 AtRLP33 receptor like protein 33 (.1) AT3G25010 288 / 2e-86 AtRLP41 receptor like protein 41 (.1) AT4G13810 284 / 2e-86 AtRLP47 receptor like protein 47 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G437800 [exp] 1065 / 0 AT2G32660 314 / 6e-99 receptor like protein 22 (.1) Potri.011G141100 [exp] 832 / 0 AT2G33020 295 / 2e-89 receptor like protein 24 (.1) Potri.001G437700 [exp] 582 / 0 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.001G389100 [exp] 360 / 1e-112 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.016G126900 [exp] 333 / 1e-102 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.001G128400 [exp] 329 / 2e-100 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.016G127101 [exp] 319 / 4e-97 AT1G47890 580 / 0.0 receptor like protein 7 (.1) Potri.016G127000 [exp] 311 / 5e-94 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.016G120600 [exp] 312 / 9e-94 AT1G47890 441 / 7e-137 receptor like protein 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002214 [exp] 270 / 5e-83 AT3G05660 293 / 2e-89 receptor like protein 33 (.1) Lus10026415 [exp] 273 / 1e-79 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10003389 [exp] 269 / 1e-78 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10042239 [exp] 269 / 3e-78 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10011064 [exp] 256 / 5e-74 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10004313 [exp] 249 / 1e-72 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10024721 [exp] 250 / 2e-72 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10011039 [exp] 253 / 6e-72 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10032335 [exp] 247 / 2e-71 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10016402 [exp] 241 / 2e-70 AT1G47890 313 / 4e-94 receptor like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G437600.1 pacid=42792552 polypeptide=Potri.001G437600.1.p locus=Potri.001G437600 ID=Potri.001G437600.1.v4.1 annot-version=v4.1 ATGATAGGTTATTGGCGAATAGCTTGTTGCTTTTCATTCCTACTCTTCTTATGTCCAGCAAACTCTAGTTTCACACCATTGTCACAAACTTCTTCTCACC CTTTCTTGGGCCAACATTGCAGTAGCAGTGAAAAAACAGCCTTGCTCCAACTCAAAAGGGATTTATCTGCAGCCAAACCTGAATCCTCTATTCCTTTCCA GCCTTCCTCAGGTTCTTTGCTTACTTCATGGAAGCATAACACTGATTGTTGCTCATGGGAAAGTGTCAATTGCCATGAAGTTACAAAACATGTGATTGGC CTTAACCTTAGTGGTCACAACCTTTCTGGTCTTGTTAATTCAATCAAGTTTCTTAACCTCCACTACCTTGAAAGGCTGAATCTTGTCAACTGCAATATTG GAGAAATCCCGAGTTTCGTGCAGAAACTAGGTGGGTTGGTTGAGCTTGACCTTTCTATCAACAAAATCCATGGCAAAGTGCCTAAATGGATTTGGCTGTT AGAAAGCTTAGTTTACTTAAATCTGTCTAACAATTTCTTGGATGGATTTGAAGCACCACCTTCTGCTCCATTTTTAAGCTCTTTGACCTCTCTCGATCTT ACCTCCAATTTAATAGAAGGATCGATTCCAACTCTACCAATCTCTATCAGCTTCCTCTCACTTGCAAAGAACAAGCTCACTGGAGAGATTCCTGTATCAT TATGCAGCTTGAGCAACCTGACAATCTTGGATGCCTGTTATAATTACATGTCAGGCCTAATTCCAAAATGTCTTGAGGTCCTTGGTGATACCCTCATCGT ACTAAATCTGCGGAAGAATAGATTTTCCGGATTGATGCCCTGGAAATTCACTAAAGAATGCAGCCTCAAGACACTCAACTTATATGCTAATCAGTTGACA GGGAAAATTCCAATGTCTCTGAAGCATTGTAAACGCCTTCAAGTTTTAGACCTTGGAGATAACCAGATTAACGACACGTTTCCTTTCTGGTTAGGGGTGC TTCCCGATTTGCGTGTTCTTATCCTACAATCAAATAGTTTGCGTGGTCCCATTGGTGAGCCATTGGCATCAAATGACTTCCCTATGCTTCAAATCTTGGA TCTATCCTCGAATTATTTCACAGGACATTTGCCATTAGATTACTTTGCAATATGGAAGTCAATGAGGATCAAGTTGAATGGGTCACTGATGTATATGGGA TCTTACTATTACAGGGAGTGGATGTCAATAACAAGCAAAGGACAAAGAATGGATGATATAAACATCTTAACAATTTTCAATGTCCTAGACCTGTCAAACA ATCTTTTTGAAGGAGAGATTCCTGAAGTGATTGGTGATCTCAAGTTGCTAGAGGTACTCAATCTGTCTACAAATAATCTGATAGGTGAGATCCCACTATC TTTATCAAAGTTGACATTGCTTGAGTCCTTAGACCTCTCAAAAAACAAGCTCATAGGTGAGATCCCAATGAAACTATTAAGCTTGACATTTCTATCGGTT CTCAACCTTTCGTATAATAGGTTAGAGGGGAAGATTCCAATAGGGAATCAATTTTCTACCTTCGCTAATGATTCCTACGAGGGAAACATCGGGTTGTGCG GGTTCCCATTGTCAAAGAAATGTGATGATGTTGAAGATCATCAGTCATCAGGAGCTCAACGAGAAAGCATCCTTTCGGATCCAATTAGTCCATTTAGTTG GAAATTTGCTTTGGTTGGATATGGATGCGGGGCGCCTGTGGGAGTTGCCATTGGTTACATCTTGTTTTGGAGGACCAAGAGATGCACTAAGTGGATTGAA CAATCATTCAAGGCAAAGAAACGGCAGAAAAATGAACAGAATCGAAGAAGAAGAAGAAAGTTCAAGTAG
AA sequence Show only first row Show all	>Potri.001G437600.1 pacid=42792552 polypeptide=Potri.001G437600.1.p locus=Potri.001G437600 ID=Potri.001G437600.1.v4.1 annot-version=v4.1 MIGYWRIACCFSFLLFLCPANSSFTPLSQTSSHPFLGQHCSSSEKTALLQLKRDLSAAKPESSIPFQPSSGSLLTSWKHNTDCCSWESVNCHEVTKHVIG LNLSGHNLSGLVNSIKFLNLHYLERLNLVNCNIGEIPSFVQKLGGLVELDLSINKIHGKVPKWIWLLESLVYLNLSNNFLDGFEAPPSAPFLSSLTSLDL TSNLIEGSIPTLPISISFLSLAKNKLTGEIPVSLCSLSNLTILDACYNYMSGLIPKCLEVLGDTLIVLNLRKNRFSGLMPWKFTKECSLKTLNLYANQLT GKIPMSLKHCKRLQVLDLGDNQINDTFPFWLGVLPDLRVLILQSNSLRGPIGEPLASNDFPMLQILDLSSNYFTGHLPLDYFAIWKSMRIKLNGSLMYMG SYYYREWMSITSKGQRMDDINILTIFNVLDLSNNLFEGEIPEVIGDLKLLEVLNLSTNNLIGEIPLSLSKLTLLESLDLSKNKLIGEIPMKLLSLTFLSV LNLSYNRLEGKIPIGNQFSTFANDSYEGNIGLCGFPLSKKCDDVEDHQSSGAQRESILSDPISPFSWKFALVGYGCGAPVGVAIGYILFWRTKRCTKWIE QSFKAKKRQKNEQNRRRRRKFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32660		AtRLP22	receptor like protein 22 (.1)		Potri.001G437600 [exp]	0	1
AT2G32660		AtRLP22	receptor like protein 22 (.1)		Potri.001G437800 [exp]	1.00	0.9481
AT3G47570			Leucine-rich repeat protein ki...		Potri.010G228200 [exp]	1.41	0.8737
AT2G30090			Acyl-CoA N-acyltransferases (N...		Potri.001G279400 [exp]	6.70	0.8011
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Potri.002G108800 [exp]	7.48	0.8306
					Potri.003G194950 [exp]	8.36	0.8306
					Potri.017G127501 [exp]	10.58	0.8306
AT3G04280		ARR22	response regulator 22 (.1.2.3)		Potri.003G172866 [exp]	12.84	0.7825
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G129400 [exp]	13.49	0.7768
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.018G043500 [exp]	14.28	0.7788
AT4G34880			Amidase family protein (.1)		Potri.004G169400 [exp]	14.49	0.7711

Compare expression of checked genes

Potri.001G437600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.