Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47890 397 / 5e-122 AtRLP7 receptor like protein 7 (.1) AT2G33060 388 / 8e-121 AtRLP27 receptor like protein 27 (.1) AT1G45616 389 / 2e-119 AtRLP6 receptor like protein 6 (.1) AT2G33050 382 / 1e-118 AtRLP26 receptor like protein 26 (.1) AT3G11010 384 / 2e-118 AtRLP34 receptor like protein 34 (.1) AT3G11080 369 / 4e-112 AtRLP35 receptor like protein 35 (.1) AT2G32680 362 / 3e-110 AtRLP23 receptor like protein 23 (.1) AT3G05660 360 / 2e-109 AtRLP33 receptor like protein 33 (.1) AT2G32660 347 / 7e-108 AtRLP22 receptor like protein 22 (.1) AT5G27060 354 / 9e-107 AtRLP53 receptor like protein 53 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G437800 [exp] 594 / 0 AT2G32660 314 / 6e-99 receptor like protein 22 (.1) Potri.011G141100 [exp] 590 / 0 AT2G33020 295 / 2e-89 receptor like protein 24 (.1) Potri.001G437600 [exp] 588 / 0 AT2G32660 306 / 5e-96 receptor like protein 22 (.1) Potri.001G128400 [exp] 573 / 0 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.016G120600 [exp] 553 / 5e-180 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.001G389100 [exp] 535 / 1e-174 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.016G126900 [exp] 523 / 7e-170 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.016G127000 [exp] 512 / 8e-166 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.016G127101 [exp] 488 / 2e-156 AT1G47890 580 / 0.0 receptor like protein 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003389 [exp] 521 / 1e-168 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10026415 [exp] 488 / 1e-155 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10042239 [exp] 472 / 2e-149 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10003387 [exp] 436 / 3e-136 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10006825 [exp] 399 / 2e-122 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10019693 [exp] 326 / 2e-99 AT2G33050 295 / 1e-91 receptor like protein 26 (.1) Lus10011064 [exp] 331 / 8e-98 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10011039 [exp] 338 / 2e-97 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10016402 [exp] 320 / 1e-96 AT1G47890 313 / 4e-94 receptor like protein 7 (.1) Lus10002214 [exp] 315 / 2e-96 AT3G05660 293 / 2e-89 receptor like protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G437700.1 pacid=42789400 polypeptide=Potri.001G437700.1.p locus=Potri.001G437700 ID=Potri.001G437700.1.v4.1 annot-version=v4.1 ATGAAGAATCATTGCAAAATTGTGCTTTGCTTTCTATTCTTGTGTTTCTCATCTCCAACAAATTCCACATCGTTGTCATCACAATCTTCTTCTACTCATT CTATTTCAGTCCAACATTGTGTTGACAGTGAAAGAACAGCCTTGCTCCAACTCAAAAGGGATTTGTTAACAGCTCAACCAGATTCTTCTTTTCCTCAACA TCCTTCCTCAGGTTCTTTGCTTCCTTCATGGAAACCCAACACTAACTGTTGCTCCTGGGAAGGTGTCGCTTGTCATCATGTCTCAGGACATGTGATCAGC CTCGACCTTAGCAGCCACAAACTATCCGGCACTTTTAATTCAACCAACCTTCTTCATCTCCCTTTCCTTGAAAAACTCAATCTTTCCAACAATAACTTTC AGTCGTCTCCATTTCCCTCCAGGCTTGATCTGATTTCCAACTTGACACATCTTAACTTTTCAAATTCAGGTTTTTCAGGACAAGTACCTTTGGAGATATC GCGGCTGACCAAATTGGTTTCTCTTGATCTCTCCACTTCTCTTTTGGATTCTTCAAAACTTGAGAAACCGAATTTTGTAAGGCTTGTGAAAGATTTGAGA AGCTTAAGGGAACTTCATCTTGATGGTGTCAATATATCAGCAGGTGGTGGCGACTGGTGCATTGCCTTACCTCTGGCAACCCCTAATCTCCAAGTTCTGA GCTTGTCAGATTGTCATCTCTCAGGTCCCGTTTGTGAATCACTCAATCAACTTTCATTGCTTTCAAAGCTTGACCTTTCTCGAAACAATCTCTCTTCAAT GTTTCCGAAAAGTATCATGCAGCTGCCAAACCTGAAGACTCTTGATTTATCGAGCAATACGCCTCTTTCAGGGACTTTGCCAGAATTTCCAATAGGCAGC AAGTTAGAAGTTTTATCTTTATTATTCACAAGTTTTTCTGGAGAAATCCCATATTCAATTGGCAATCTTCAATTTTTGATTAAACTGAACTTGAGGAATT GCAGTTTCTCTGGATTGATACCTTCTTCTCTTGCAAGCCTAAACCAACTTGTTGATTTGGATCTCTCATCCAACAAGTTTCTGGGATGGATTCCATTCCT TCCACCATTAAAGAAAGGCCCGAGACTACTCGATTCAGTAAACCATATTGGGTTAGAGAATCTAGGCTCTCTTTTTATTGAGAGCAATTCCATGGAGGCG ACTTTGAACTCCTCACTTTTTGAGCTACCTTCCCTGGAGAAATTGCTACTAAGTCAAAACAGGCTTAGTGGCGTCCTACAAGATTTTGAACGAGCTTTTT TATCGCCCCTAAGTGTTGTTGATCTAAGCATCAACAATTTGGAAGGGCATATCCCTAATTCGTTTCTTGAACTTCAGAATCTTACTGAATTGAAGCTTTT TTCCAACAACTTTAGCGGTGCCATCAATTTAAGCATGATCAAGAGCATTGAGAGCCTTGCATTCCTTCAGTTGTCTGACAATAGCCAATTGACTATTGCC TATTCAAGCAACTTAAAACTACCCCAGCTTCAAAGATTGTGGTTTGACTCCTGCAATGTTAGCCGAATCCCAAGTTTCCTACGAAACCAAGATGGATTAG TTGAGCTGGGCCTTTCGAACAACAAAATCCAAGGCATACTTCCCAAATGGATATGGCAATTAGAAAGCTTGTCTTACTTGAATTTGTCCAACAACTTTTT GACTGGGATTGAAACACCAGTTCTTGCTCCACTATTCAGTTCTTTGACCTTGCTTGACCTTAGTTATAATTTCCTAGAAGGATCATTCCCTATATTTCCA CCCTCTGTAAACCTCCTTTCGCTTTCTAAGAACAAGTTCACTGGAAAGCTTCCTGTATCATTTTGCAACATGAACAGTTTAGCAATCCTGGACATTTCCT ATAACCATCTGACTGGTCAAATCCCACAATGTCTTGGGAACCTTAGTTCCGCTCTCACAGTAGTAAATCTAAGAGAGAACCAGTTTTCTGGGTCCATGCT TTGGAATTTCACTGAAGAATGCAGTCTGACGACGCTCAATCTCTATAGGAATCAGTTCAAAGGGGAAATACCAGCGTCTTTGGGAAATTGCAGAGGACTC AAAGTCTTAGACCTCGGTGACAACCAGATTAATGACACATTCCCTTTTTGGTTAGGGAAGCTTCCTAACTTGCAAGTCCTTATCCTCCAATCCAATAGAT TACATGGTTCCATTGGTCAGCCACTGACACCAAATGACTTCCCAAAGCTTCATATACTCGATCTCTCCTCGAATTACTTCACTGGAAATTTGCCATCTGA CTACATTGGAATATGGCAGTCAATGAAGATGAAGTTGAACGAAAAATTGTTGTACATGGGAGGCTTCTACTACAGGGATTGGATGACAATAACAAACAAA GGACAGAGAATGGAAAATATTCACATCTTAACCATTTTCACTGTCCTAGACCTCTCAAACAATCGTTTCGAAGGAGAGATTCCTGAAATGATTTGTGATC TCAAGTTGCTACAAGTACTCAACTTGTCTAGAAACAATCTCGTTGGCGAGATTCCAACATCTCTCTCAAAATTGGCAAAGCTTGAGTCTTTAGACCTCTC ACAGAACAAGCTCACAGGGGAGATACCAATGCAACTAACAGACTTGACATTCCTCTCTGTGCTCAACCTTTCTTACAATAGATTGGTTGGGAGAATACCG GTAGCCAATCAATTTTTAACGTTCGCTAATGATTCCTATGGTGGCAACTTGGGACTATGTGGATTTCCATTGTCAAGGAAATGTAGACATCTTGAGAACG ATCCATCAGGAAAGCAACAAGAGGACTCAGGAAAAAAAGGTACTCCATTTAGTTGGAGATTTGCACTGGTTGGATATGGTGTTGGAATGCTTCTGGGAGT TGTCATTGGTTACATGTTGTTTTGGAGGACTACTGGATGCAGCAGGTGGATTGAACTGTTTTTTAAGGCAAAGAAATGGTAG
AA sequence Show only first row Show all	>Potri.001G437700.1 pacid=42789400 polypeptide=Potri.001G437700.1.p locus=Potri.001G437700 ID=Potri.001G437700.1.v4.1 annot-version=v4.1 MKNHCKIVLCFLFLCFSSPTNSTSLSSQSSSTHSISVQHCVDSERTALLQLKRDLLTAQPDSSFPQHPSSGSLLPSWKPNTNCCSWEGVACHHVSGHVIS LDLSSHKLSGTFNSTNLLHLPFLEKLNLSNNNFQSSPFPSRLDLISNLTHLNFSNSGFSGQVPLEISRLTKLVSLDLSTSLLDSSKLEKPNFVRLVKDLR SLRELHLDGVNISAGGGDWCIALPLATPNLQVLSLSDCHLSGPVCESLNQLSLLSKLDLSRNNLSSMFPKSIMQLPNLKTLDLSSNTPLSGTLPEFPIGS KLEVLSLLFTSFSGEIPYSIGNLQFLIKLNLRNCSFSGLIPSSLASLNQLVDLDLSSNKFLGWIPFLPPLKKGPRLLDSVNHIGLENLGSLFIESNSMEA TLNSSLFELPSLEKLLLSQNRLSGVLQDFERAFLSPLSVVDLSINNLEGHIPNSFLELQNLTELKLFSNNFSGAINLSMIKSIESLAFLQLSDNSQLTIA YSSNLKLPQLQRLWFDSCNVSRIPSFLRNQDGLVELGLSNNKIQGILPKWIWQLESLSYLNLSNNFLTGIETPVLAPLFSSLTLLDLSYNFLEGSFPIFP PSVNLLSLSKNKFTGKLPVSFCNMNSLAILDISYNHLTGQIPQCLGNLSSALTVVNLRENQFSGSMLWNFTEECSLTTLNLYRNQFKGEIPASLGNCRGL KVLDLGDNQINDTFPFWLGKLPNLQVLILQSNRLHGSIGQPLTPNDFPKLHILDLSSNYFTGNLPSDYIGIWQSMKMKLNEKLLYMGGFYYRDWMTITNK GQRMENIHILTIFTVLDLSNNRFEGEIPEMICDLKLLQVLNLSRNNLVGEIPTSLSKLAKLESLDLSQNKLTGEIPMQLTDLTFLSVLNLSYNRLVGRIP VANQFLTFANDSYGGNLGLCGFPLSRKCRHLENDPSGKQQEDSGKKGTPFSWRFALVGYGVGMLLGVVIGYMLFWRTTGCSRWIELFFKAKKW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.001G437700 [exp]	0	1
AT3G57710			Protein kinase superfamily pro...		Potri.002G004900 [exp]	1.41	0.8739
					Potri.001G382300 [exp]	4.47	0.8227
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Potri.004G133420 [exp]	7.48	0.7897
AT4G22990			Major Facilitator Superfamily ...		Potri.014G078000 [exp]	7.93	0.7977
AT2G27080			Late embryogenesis abundant (L...		Potri.005G166600 [exp]	15.49	0.7713
					Potri.002G047750 [exp]	16.06	0.8200
AT2G06530		VPS2.1	SNF7 family protein (.1)		Potri.006G144300 [exp]	17.60	0.7455
					Potri.003G105450 [exp]	20.19	0.7560
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Potri.001G110400 [exp]	20.71	0.7414
					Potri.007G082350 [exp]	20.90	0.7621

Compare expression of checked genes

Potri.001G437700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.