Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18470 158 / 2e-44 Curculin-like (mannose-binding) lectin family protein (.1) AT1G67520 141 / 6e-37 lectin protein kinase family protein (.1) AT3G16030 134 / 2e-34 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT1G61610 120 / 2e-29 S-locus lectin protein kinase family protein (.1) AT4G21390 114 / 2e-27 B120 S-locus lectin protein kinase family protein (.1) AT2G19130 112 / 6e-27 S-locus lectin protein kinase family protein (.1) AT3G12000 106 / 3e-25 S-locus related protein SLR1, putative (S1) (.1) AT4G03230 104 / 4e-24 S-locus lectin protein kinase family protein (.1) AT4G21380 100 / 7e-23 ARK3 receptor kinase 3 (.1) AT1G11330 100 / 1e-22 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G441400 [exp] 568 / 0 AT3G16030 523 / 1e-174 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.001G441180 [exp] 509 / 7e-179 AT3G16030 274 / 3e-82 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.001G442200 [exp] 378 / 1e-124 AT3G16030 528 / 5e-176 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.001G441040 [exp] 244 / 1e-74 AT4G03230 322 / 1e-97 S-locus lectin protein kinase family protein (.1) Potri.013G121000 [exp] 128 / 3e-32 AT2G19130 863 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411100 [exp] 128 / 3e-32 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411000 [exp] 128 / 5e-32 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014700 [exp] 125 / 3e-31 AT4G21390 671 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014900 [exp] 124 / 1e-30 AT4G21390 660 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023391 [exp] 296 / 1e-90 AT1G11300 520 / 5e-168 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10003099 [exp] 158 / 2e-44 AT5G18470 296 / 4e-97 Curculin-like (mannose-binding) lectin family protein (.1) Lus10003156 [exp] 136 / 1e-34 AT3G16030 556 / 0.0 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Lus10014812 [exp] 132 / 2e-33 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039731 [exp] 131 / 4e-33 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10025784 [exp] 130 / 9e-33 AT3G16030 596 / 0.0 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Lus10038413 [exp] 119 / 1e-32 AT1G61440 56 / 5e-10 S-locus lectin protein kinase family protein (.1) Lus10029802 [exp] 126 / 2e-31 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028782 [exp] 126 / 2e-31 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10018516 [exp] 126 / 2e-31 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.001G437875.1 pacid=42793739 polypeptide=Potri.001G437875.1.p locus=Potri.001G437875 ID=Potri.001G437875.1.v4.1 annot-version=v4.1 ATGCTTCTTACTTTTTTCTTCCGTGTTCAAGAATGTTACCTTCCATGGCTAGAAGGATCTACCGGTTCCTTTTGTTTTGCTTCTGTGCCTCTCACGTTTT GGCAGCAGACACTGTACCAAGGTGGTCATTCCCTCAATTCTTCCAATACTCTAGTTTCCAAAAATGGGCTCTTCACTTTAGGATTCACAAGACTTGGCTC TGCTGAGTCGAATGCTACCTACTTGGGAATATGGTACAACAACGACAGAAGCCACCCTTTTTGGCTAGCCAACAGAGACAAACCCATAGCAGACAATTCA GGGGTTCTTGCAATAGATGGATCAGGAAATATGAAACTCACCTACTCTAGAGGTGATCCTGTTGAGTTCTATTCAAGTCAATCTTCTACAACCAATATAA CAGCTATTTTAGAAGATTCAGGCAATTTTGTTCTCATAGATGAAAATTCTAGCAGCCAACAGGTCTTATGGCAAAGCTTTGACTTTCCTACTGACACAGT CTTGCCTGGAATGAAGTTAGGGATCAACCATAGAACTGGCCAAACCTGGTCCCTCGTGTCGTGGTTGAGCGACATAGTACCCACTCCCGCTGGTGCTTTC ACTTTGGAATGGGATACTAATGGAAAGGAGTTGGTCATTAAGCGGCGAGATGTAATTTATTGGACTAGTGGACTATTCACGAGCAATACAAGTTTCGAAA TTCCTTCTCTGGATCAAAGTTTTAAGATAGTTTCTAACGCAGGCGAGGATTACTTAATGTTCAACGTTTCTCCAAAACAATTTACTGCTCAGGGTCAAAG AAATTTTTCAATGTGGCAGTTGAAATATGATGGGAGCATAGCAGATCAAAGTACTGGACGAACATATGGGGGCACAGCATGTACAGGAAATAACACAGAT ATCGATGGTGGTTGCGAGAGGTGGTCAGGACCGGCATGCAGGAGCAATAGGAACAGTTTTGAATTGACATCAGGTTCGTTTGTTAACAAAGTTCCTAGGA AGTACGACGATAATTCTAGTCTTAGCATTAGTGATTGCAAGGACATCTGCTGGAAAGATTGTCAATGTGTTGGTGTTAGTACCATAGGCAATAATGCCAC AATACTGGATGCACGTTTTTTTATGGAAGCTTTACACAAGACCTGA
AA sequence Show only first row Show all	>Potri.001G437875.1 pacid=42793739 polypeptide=Potri.001G437875.1.p locus=Potri.001G437875 ID=Potri.001G437875.1.v4.1 annot-version=v4.1 MLLTFFFRVQECYLPWLEGSTGSFCFASVPLTFWQQTLYQGGHSLNSSNTLVSKNGLFTLGFTRLGSAESNATYLGIWYNNDRSHPFWLANRDKPIADNS GVLAIDGSGNMKLTYSRGDPVEFYSSQSSTTNITAILEDSGNFVLIDENSSSQQVLWQSFDFPTDTVLPGMKLGINHRTGQTWSLVSWLSDIVPTPAGAF TLEWDTNGKELVIKRRDVIYWTSGLFTSNTSFEIPSLDQSFKIVSNAGEDYLMFNVSPKQFTAQGQRNFSMWQLKYDGSIADQSTGRTYGGTACTGNNTD IDGGCERWSGPACRSNRNSFELTSGSFVNKVPRKYDDNSSLSISDCKDICWKDCQCVGVSTIGNNATILDARFFMEALHKT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18470			Curculin-like (mannose-binding...		Potri.001G437875 [exp]	0	1
AT3G01400			ARM repeat superfamily protein...		Potri.014G016400 [exp]	4.58	0.8328
AT5G10980			Histone superfamily protein (....		Potri.005G235700 [exp]	4.69	0.7968
AT4G19640		ATRAB-F2B, ARA7...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.003G054900 [exp]	7.54	0.8407
AT2G03090		ATHEXPALPHA1.3,...	EXPANSIN 15, expansin A15 (.1)		Potri.001G001100 [exp]	9.79	0.8081	PtrEXPA10,EXP2.6
AT1G53380			Plant protein of unknown funct...		Potri.011G108000 [exp]	10.58	0.8182
AT4G01720	WRKY	ATWRKY47, WRKY4...	WRKY family transcription fact...		Potri.014G111900 [exp]	17.60	0.8407
AT3G06390			Uncharacterised protein family...		Potri.008G205000 [exp]	19.44	0.7979
					Potri.017G143760 [exp]	21.21	0.8047
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Potri.017G078100 [exp]	29.86	0.8298
AT3G07565			Protein of unknown function (D...		Potri.007G132700 [exp]	34.35	0.8123

Compare expression of checked genes

Potri.001G437875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.