Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21390 407 / 1e-135 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 405 / 5e-135 S-locus lectin protein kinase family protein (.1.2) AT4G23180 389 / 2e-130 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT3G16030 388 / 3e-128 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT4G03230 392 / 4e-128 S-locus lectin protein kinase family protein (.1) AT1G11350 384 / 1e-126 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT4G23230 372 / 4e-126 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT1G11340 384 / 5e-126 S-locus lectin protein kinase family protein (.1) AT1G65790 382 / 8e-126 ARK1 receptor kinase 1 (.1) AT4G11530 377 / 1e-125 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G441400 [exp] 682 / 0 AT3G16030 523 / 1e-174 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.001G442200 [exp] 573 / 0 AT3G16030 528 / 5e-176 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.001G441040 [exp] 507 / 1e-176 AT4G03230 322 / 1e-97 S-locus lectin protein kinase family protein (.1) Potri.001G441801 [exp] 489 / 9e-176 AT4G21390 301 / 1e-96 S-locus lectin protein kinase family protein (.1) Potri.011G037300 [exp] 440 / 3e-148 AT4G21390 922 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037600 [exp] 436 / 1e-146 AT4G21390 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027900 [exp] 426 / 8e-143 AT4G21390 915 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 422 / 6e-141 AT4G21380 711 / 0.0 receptor kinase 3 (.1) Potri.004G027800 [exp] 419 / 4e-140 AT4G21390 941 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023391 [exp] 507 / 6e-170 AT1G11300 520 / 5e-168 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10018408 [exp] 423 / 1e-140 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 416 / 1e-138 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10003156 [exp] 413 / 9e-138 AT3G16030 556 / 0.0 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Lus10007600 [exp] 425 / 1e-135 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10038552 [exp] 407 / 1e-135 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 402 / 1e-133 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037731 [exp] 394 / 4e-133 AT4G27290 644 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033752 [exp] 385 / 5e-133 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 400 / 2e-132 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G437950.1 pacid=42788902 polypeptide=Potri.001G437950.1.p locus=Potri.001G437950 ID=Potri.001G437950.1.v4.1 annot-version=v4.1 ATGGGGCTCGCGGGACTCTTGTGGTATCTGAGAAAGAGAAGACTTCGAGAGAAGTATCTCAATGAGTTGCTCACATTGGATTCAACGAACGAGACGCATG AACTCGAAAATGACGGAAACAAGGGCCATAATTTAAAGTTATATAATGCAGCAACAATTATGGCTGCTACAAATTCCTTTTCTGCAGACAATAAACTTGG ACAAGGTGGCTTTGGACCAGTTTACAAGGGGAAATTGCCGGATGGGCGAGAGATAGCTGTAAAAAGATTGTCTAGAAGTTCAGGACAAGGGCTGGTGGAA TTCAAAAACGAGCTTATTCTCATAGCTAAATTGCAACACATGAATCTTGTCAGGCTCCTAGGCTGCTGCATTCAAGGGGAAGAGAAAATGTTAGTGTACG AATACATGCCTAATAAAAGCTTGGATACATTTATATTTGATAAATCAAAAAGGGAGCTCATAGACTGGAAGAAGCGATTTGAAATCATTGAAGGGATAGC TCAAGGGCTCCTTTACCTTCATAAGTATTCAAGATTGAGGATAATTCATAGAGATTTGAAGGCTGGCAACATACTACTTGATGAAAATCTGAACCCCAAA ATTTCTGATTTTGGCATGGCAAGAATTTTCAAGATCAATGATTTAGAAGGAAATACAAACCAAATTGTTGGGACGCGTGGATATATGTCTCCTGAATATG TTATGGAGGGCATTTTCTCTGTGAAATCTGATGGCTTCAGTTTTGGAGTTCGACTGCTGGAAATTGTGAGTGGTAGAAGGATCCAAGGCCTCCTTGAAAT AGACGGTCACCCTCTCAATCTTGTGGGATATGCATGGGAGCTATGGAAAGCAGGTAGCCCATTTGAGCTGGTGGATCCAACACTAAGAGAATCTTGCTCC AAAGACCAAGTCTTGAGATGCATTCATGTGGGCTTGCTATGTGTAGAAGACAATGCAGTGGATAGGCCGATTATGTCAGATGTTATATCAATGCTAACAA GCGAAGCACAATTACCACTTCCCAAACAGCCTGCATTTTCCAATGCAAGAAGTATTGTGGAAGAAAAGAGCCTCAGCAAGCCTGCAGAGATTGGTTCCAT AAATTATGTATCTCTGTCAACCAAGGATGTGAGATAG
AA sequence Show only first row Show all	>Potri.001G437950.1 pacid=42788902 polypeptide=Potri.001G437950.1.p locus=Potri.001G437950 ID=Potri.001G437950.1.v4.1 annot-version=v4.1 MGLAGLLWYLRKRRLREKYLNELLTLDSTNETHELENDGNKGHNLKLYNAATIMAATNSFSADNKLGQGGFGPVYKGKLPDGREIAVKRLSRSSGQGLVE FKNELILIAKLQHMNLVRLLGCCIQGEEKMLVYEYMPNKSLDTFIFDKSKRELIDWKKRFEIIEGIAQGLLYLHKYSRLRIIHRDLKAGNILLDENLNPK ISDFGMARIFKINDLEGNTNQIVGTRGYMSPEYVMEGIFSVKSDGFSFGVRLLEIVSGRRIQGLLEIDGHPLNLVGYAWELWKAGSPFELVDPTLRESCS KDQVLRCIHVGLLCVEDNAVDRPIMSDVISMLTSEAQLPLPKQPAFSNARSIVEEKSLSKPAEIGSINYVSLSTKDVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.001G437950 [exp]	0	1
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.001G441801 [exp]	1.41	0.8355
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.005G184400 [exp]	18.65	0.7700	GA20ox3
					Potri.007G042350 [exp]	21.21	0.7512
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Potri.014G041532 [exp]	24.69	0.7072
AT5G62280			Protein of unknown function (D...		Potri.002G147200 [exp]	25.74	0.7757
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Potri.001G455000 [exp]	33.94	0.6613
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.017G136000 [exp]	36.90	0.6202
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.017G051300 [exp]	37.08	0.7114
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Potri.003G203600 [exp]	39.71	0.6945
AT2G30720			Thioesterase/thiol ester dehyd...		Potri.017G009800 [exp]	42.24	0.6094

Compare expression of checked genes

Potri.001G437950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.