Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79030 783 / 0 Chaperone DnaJ-domain superfamily protein (.1) AT1G16680 766 / 0 Chaperone DnaJ-domain superfamily protein (.1) AT5G49580 335 / 6e-107 Chaperone DnaJ-domain superfamily protein (.1) AT1G77020 58 / 7e-09 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G59980 56 / 4e-08 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT1G76700 54 / 2e-07 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G08970 54 / 2e-07 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT1G68370 54 / 2e-07 ARG1 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) AT4G39150 53 / 2e-07 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT2G21510 53 / 2e-07 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G142000 [exp] 935 / 0 AT1G79030 749 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.010G148900 [exp] 335 / 2e-106 AT5G49580 613 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.008G101800 [exp] 194 / 2e-56 AT5G49580 355 / 1e-116 Chaperone DnaJ-domain superfamily protein (.1) Potri.008G123200 [exp] 57 / 1e-08 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.005G260400 [exp] 57 / 2e-08 AT1G21080 585 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.010G122300 [exp] 57 / 2e-08 AT1G68370 671 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.002G000300 [exp] 56 / 3e-08 AT1G21080 602 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.010G036200 [exp] 56 / 3e-08 AT1G24120 566 / 0.0 ARG1-like 1 (.1) Potri.004G158300 [exp] 56 / 4e-08 AT4G39150 469 / 2e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032666 [exp] 900 / 0 AT1G79030 772 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10043089 [exp] 415 / 3e-142 AT1G79030 398 / 6e-136 Chaperone DnaJ-domain superfamily protein (.1) Lus10017085 [exp] 346 / 2e-110 AT5G49580 670 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10037801 [exp] 294 / 8e-89 AT5G49580 595 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10028809 [exp] 61 / 6e-10 AT4G39150 517 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017472 [exp] 61 / 7e-10 AT4G39150 519 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017980 [exp] 59 / 6e-09 AT4G39150 532 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10041972 [exp] 58 / 6e-09 AT4G39150 534 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10037502 [exp] 58 / 6e-09 AT5G49060 340 / 7e-116 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Lus10005113 [exp] 59 / 7e-09 AT1G68370 688 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF14901 [poplar] [flax] Jiv90 Cleavage inducing molecular chaperone
Representative CDS sequence Show only first row Show all	>Potri.001G438300.2 pacid=42788057 polypeptide=Potri.001G438300.2.p locus=Potri.001G438300 ID=Potri.001G438300.2.v4.1 annot-version=v4.1 ATGGAGGATATTGGGCTGGTTAAGCAAGGGTGGAAATGGTTGCAAACGCAGAAACATGTCTATTCACGGGTGAAAATTGCAGTGGGGTGTTTGAGGGACA AGATCGGAGTGTTTATAGAGAGGCATTGGCCTATGGTGTGCAGTGGATGTGCAAGATTTGGGAGGTTGATGCGTTTTATGTTGATTTATTGGAAAGATTG CGCTACGAGGGGTTTTAATTCTGTTATCAAACTGGGTTCGGCAGCTTTGCTTCTTATAATGTGGAGTTGCTTCCTTAGTCTCACTTCAATGTCTTGCTTG CTTTATGTACTACTTTGTATGGGAGCTGCAGGAGCTGCTGTTCAGTATTTGGGCTACACTCCTGGACTTTTTATTGTAGGGCTATTTGCTATTTTAATTT TATGGATGTATGCTAACTTTTGGATAACTGGAACATTATTTATAGTTGGAGGCTATTTGTTCTCTCTAAATCATGCACGGCTAGTGGTCTTAATGGCGAC TATATATGCTATTTATTGTGTGAAAGTTCGAGTTGGATGGCATGGTGTTTTCCTATCAATAAACCTCACCTTTTTCTCAAATGATGTATTAAACTTTCTA CTTCAATGGTGTGATAATGTTAGTGAAAGCACCCAATTTGAAGAGCATAAGGAATCTGAAACAGTTCTGGAAGATGAGTTCTCTGTGGAATGTGAATTCT CAATTCCTGTTGATGAATCTGAAAAGGTGCAACCATGCAAATCATCTAGCCCAGCTGCTAGCTCATCTGTTGTGAATAACCAAAGAGAGTCTTCCACTAG AAAAGTAGTTGTAGAAGAAACAAGCTCAACCAATGAGATGAAAAGAATATTAGATAGTGTGGATCATTATGAAGCATTGGGATTTTCTCGCCACAAGCGA ATTGATGTTGCCATTTTGAAAAAGGAATACCATAAAAAGGCCATGCGTGTCCATCCTGATAAAAATATGGGAAGCCCTTTAGCAAGTGAATCATTTAAGA AACTTCAATGTGCTTATGAGGTTCTGTCAGATTCTGTGAAGAAGAGAGACTATGATGAGCAACTGAGAAGGGAAGAATCTAAGACTAGGAGCGTATGTCA GAAGTCCCATGGTACTTCATGTCAGCAGGATAATCCAGATTACTGCTCTGAGGAATCCAGGCGGATACAGTGCACCAAATGTGGCATTTCACATATATGG GTGTGCACTAATAGGACCAAGGCCAAGGCAAGATGGTGTCAGGATTGCTGCCAATATCATCAAGCCAAAGATGGAGATGGATGGGTTGAATATAAAGGCA CATTGGTCTTTGATAGGCCTCAAAAGATGGAGATTCCGCGTGCATTTGTTTGTGCTGAGAGCAAAATCTTTGATGTGTCAGAATGGGCCATTTGTCAGGG AATGCAATGTCGGCCCAACACCCATAGGCCAAGCTTCCATGTAAACATGGTTGGCTTGGAGAAGACTCAACGGTCCAACTCGAGCAGATATCCATGGGAC TTGGATGCTGAAATGATGGATGAGGATGAAGAAGAATTCGAGCTGTGGCTTCAGCAGGCCCTGGCATCTGGCCTTTTTTGTGAGACCTCCAAACGTAGAA AGAGTTGGAGTCCTTTTAAGCTGCCTCAAAAGAAAGGGAAAAAGCAATGGCGAAGGACATCAACTTGA
AA sequence Show only first row Show all	>Potri.001G438300.2 pacid=42788057 polypeptide=Potri.001G438300.2.p locus=Potri.001G438300 ID=Potri.001G438300.2.v4.1 annot-version=v4.1 MEDIGLVKQGWKWLQTQKHVYSRVKIAVGCLRDKIGVFIERHWPMVCSGCARFGRLMRFMLIYWKDCATRGFNSVIKLGSAALLLIMWSCFLSLTSMSCL LYVLLCMGAAGAAVQYLGYTPGLFIVGLFAILILWMYANFWITGTLFIVGGYLFSLNHARLVVLMATIYAIYCVKVRVGWHGVFLSINLTFFSNDVLNFL LQWCDNVSESTQFEEHKESETVLEDEFSVECEFSIPVDESEKVQPCKSSSPAASSSVVNNQRESSTRKVVVEETSSTNEMKRILDSVDHYEALGFSRHKR IDVAILKKEYHKKAMRVHPDKNMGSPLASESFKKLQCAYEVLSDSVKKRDYDEQLRREESKTRSVCQKSHGTSCQQDNPDYCSEESRRIQCTKCGISHIW VCTNRTKAKARWCQDCCQYHQAKDGDGWVEYKGTLVFDRPQKMEIPRAFVCAESKIFDVSEWAICQGMQCRPNTHRPSFHVNMVGLEKTQRSNSSRYPWD LDAEMMDEDEEEFELWLQQALASGLFCETSKRRKSWSPFKLPQKKGKKQWRRTST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79030			Chaperone DnaJ-domain superfam...		Potri.001G438300 [exp]	0	1
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Potri.006G212400 [exp]	7.54	0.7967
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.001G135300 [exp]	10.24	0.7954
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.011G091900 [exp]	10.95	0.7927	ARF6.4
AT1G27900			RNA helicase family protein (....		Potri.010G057200 [exp]	11.83	0.8161
AT3G12590			unknown protein		Potri.008G052700 [exp]	12.96	0.8180
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Potri.016G079200 [exp]	13.26	0.8077
AT3G44530		HIRA	homolog of histone chaperone H...		Potri.004G184900 [exp]	13.96	0.8134
AT1G63020		SMD2, PolIVa, S...	SILENCING MOVEMENT DEFICIENT 2...		Potri.001G111300 [exp]	16.61	0.8217
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Potri.018G036600 [exp]	18.16	0.8260
AT1G63500			Protein kinase protein with te...		Potri.003G126700 [exp]	18.54	0.8178

Compare expression of checked genes

Potri.001G438300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.