Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16670 529 / 0 Protein kinase superfamily protein (.1) AT3G09010 348 / 7e-118 Protein kinase superfamily protein (.1) AT1G56130 350 / 2e-111 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 347 / 1e-110 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 346 / 3e-110 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56120 343 / 6e-109 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 338 / 2e-107 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53430 337 / 8e-107 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 335 / 9e-106 Leucine-rich repeat transmembrane protein kinase (.1) AT3G14840 333 / 2e-105 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G142100 [exp] 639 / 0 AT1G16670 530 / 0.0 Protein kinase superfamily protein (.1) Potri.011G112000 [exp] 480 / 8e-170 AT1G16670 476 / 2e-168 Protein kinase superfamily protein (.1) Potri.001G393200 [exp] 479 / 2e-168 AT1G16670 471 / 2e-165 Protein kinase superfamily protein (.1) Potri.010G221400 [exp] 391 / 3e-135 AT1G16670 379 / 9e-131 Protein kinase superfamily protein (.1) Potri.006G128500 [exp] 374 / 2e-128 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1) Potri.016G114800 [exp] 358 / 6e-122 AT3G09010 486 / 3e-172 Protein kinase superfamily protein (.1) Potri.004G040200 [exp] 356 / 2e-121 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 353 / 3e-120 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.011G073066 [exp] 340 / 1e-114 AT1G07650 488 / 1e-164 Leucine-rich repeat transmembrane protein kinase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026207 [exp] 568 / 0 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10042460 [exp] 549 / 0 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10028149 [exp] 436 / 2e-152 AT1G16670 434 / 6e-152 Protein kinase superfamily protein (.1) Lus10042851 [exp] 426 / 4e-148 AT1G16670 429 / 3e-149 Protein kinase superfamily protein (.1) Lus10026503 [exp] 362 / 1e-123 AT1G16670 369 / 2e-126 Protein kinase superfamily protein (.1) Lus10019933 [exp] 360 / 5e-123 AT1G16670 364 / 1e-124 Protein kinase superfamily protein (.1) Lus10004825 [exp] 347 / 2e-117 AT3G09010 496 / 5e-176 Protein kinase superfamily protein (.1) Lus10011193 [exp] 345 / 4e-117 AT3G09010 416 / 6e-145 Protein kinase superfamily protein (.1) Lus10023510 [exp] 345 / 6e-116 AT1G16670 331 / 1e-110 Protein kinase superfamily protein (.1) Lus10018481 [exp] 344 / 1e-115 AT3G09010 414 / 7e-143 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G438400.1 pacid=42788282 polypeptide=Potri.001G438400.1.p locus=Potri.001G438400 ID=Potri.001G438400.1.v4.1 annot-version=v4.1 ATGACTTGTTTTTCTTTCTTATGTGGTAGACGGATAGATTCTTCTCAAGAATCTCAACATATGGGTAGAGATGATGAAGAACTTGGAAGCATTAAGAATG TTAGATGTTACACCTACAGGGAATTAAGAAATGCCACCGAAGGTTTTAGTGCGGCCAACAAAATTGGGGAGGGTGGTTTTGGTTCTGTATACAAGGGACG GCTGAAACATGGGAAGATAGCTGCTATAAAAGTTCTTTCAGCCGAGTCGAGACAAGGGGTGGAAGAGTTCTTAGCAGAGATTAAAGCAATGTCAGAGATA GAGCATGAAAACTTGGTTAAGCTGTATGGATGTTGCGTAGAAGATAATCACAGAATTTTAGTTTACAATTACCTTGAGAACAATAGCCTTGCGCAAACTC TTCTTGATGGAGGTCATAGTCACAGCAATATCCAGTTTAGTTGGAGAACACGGACTAAGATATGCATTGGGGTAGCAAGAGGGCTTACTTTCCTTCACGA GGAAGTCAAACCATACATCGTTCATAGAGATATCAAAGCAAGCAATATTCTTCTTGACAAAGACCTCACTGCGAAAATTTCAGATTTTGGTCTGGCTAAG CTTATACCAGACAACCAGACTCATGTCAGTACACGAGTAGCTGGAACACTAGGTTATCTGGCACCAGAGTATGCAATAAGGGGGAAATTGACTCGGAAAG CAGATCTCTATAGTTTCGGTGTCCTCCTTTTGGAAATTGTTAGTGGGAGAAATAACACAAATACACGATTACCTGTTGAAGAACAATACCTCTTAGAACG GACCTGGGAACTTTATGAGCGAAGGGAGCTGGTTTCCCTGGTAGATGCATCATTAAATGGTGACTTTAATGCTGAGGAGGCTTGTAGGTTTCTAAAAATT GGTCTCCTCTGCACCCAAGATGATCCAAATCTCCGGCCTTCCATGTCTACTGTAGTCAAAATGCTGACTGGCCGGAAGAATTTTGACGAGAGAAAGATAA CAAAGCCAGGCCTTATTTCTGATTTCATGGACCTCAAAGTACGAGCTCCCTCCAAGACCAAAGCATCTGCTTCAACATCCTTTAATGTATCTTCTGGGTC GGACAACCAGGACACTTCAATATTGACATCAGAAAACTCATCAAGTGTAACCATGACGGCTTTCACGGAATTATATAATCGGAGCATTTAA
AA sequence Show only first row Show all	>Potri.001G438400.1 pacid=42788282 polypeptide=Potri.001G438400.1.p locus=Potri.001G438400 ID=Potri.001G438400.1.v4.1 annot-version=v4.1 MTCFSFLCGRRIDSSQESQHMGRDDEELGSIKNVRCYTYRELRNATEGFSAANKIGEGGFGSVYKGRLKHGKIAAIKVLSAESRQGVEEFLAEIKAMSEI EHENLVKLYGCCVEDNHRILVYNYLENNSLAQTLLDGGHSHSNIQFSWRTRTKICIGVARGLTFLHEEVKPYIVHRDIKASNILLDKDLTAKISDFGLAK LIPDNQTHVSTRVAGTLGYLAPEYAIRGKLTRKADLYSFGVLLLEIVSGRNNTNTRLPVEEQYLLERTWELYERRELVSLVDASLNGDFNAEEACRFLKI GLLCTQDDPNLRPSMSTVVKMLTGRKNFDERKITKPGLISDFMDLKVRAPSKTKASASTSFNVSSGSDNQDTSILTSENSSSVTMTAFTELYNRSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16670			Protein kinase superfamily pro...		Potri.001G438400 [exp]	0	1
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.006G105300 [exp]	1.73	0.9439
AT1G06800		PLA-I{gamma}1	phospholipase A I gamma 1, alp...		Potri.005G218500 [exp]	1.73	0.9357
AT2G15730			P-loop containing nucleoside t...		Potri.014G034300 [exp]	2.00	0.9438
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Potri.018G086900 [exp]	3.46	0.9149
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Potri.008G082100 [exp]	4.24	0.9250
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Potri.010G079200 [exp]	4.47	0.9213
AT2G15760			Protein of unknown function (D...		Potri.004G143500 [exp]	5.09	0.9071
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.013G153400 [exp]	5.29	0.9309
AT5G57580			Calmodulin-binding protein (.1...		Potri.011G043300 [exp]	5.91	0.9246	CBP60.12
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Potri.018G124600 [exp]	6.00	0.9220	Pt-CRCK3.2

Compare expression of checked genes

Potri.001G438400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.