Plant FIBer expression Database

Potri.001G438500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G56000 528 / 0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
AT1G55980 439 / 1e-152 FAD/NAD(P)-binding oxidoreductase family protein (.1)
AT3G04650 132 / 6e-34 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G055800
[exp]
129 / 4e-33 AT3G04650 657 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039206
[exp]
506 / 2e-180 AT1G56000 526 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Lus10013734
[exp]
493 / 2e-175 AT1G56000 497 / 4e-177 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Lus10022002
[exp]
127 / 2e-32 AT3G04650 588 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Lus10042542
[exp]
125 / 2e-31 AT3G04650 585 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF13450 NAD_binding_8 NAD(P)-binding Rossmann-like domain
Representative CDS sequence
>Potri.001G438500.2 pacid=42791900 polypeptide=Potri.001G438500.2.p locus=Potri.001G438500 ID=Potri.001G438500.2.v4.1 annot-version=v4.1
ATGACCATAACTACCATTAACTACAAGCTCCTGCCTTTTTGTCTCTGCAAATCCGATCCATCCATCGACACCACCACCATGAGCAACGTTGCAACTAAAG
TCGCAGTTGTTGGAGGTGGAATATCAGGAGCAGTATGTGCATCAACACTAGCAAAGAATGGAATCTCTGTGACGCTCTTCGAGTCTGCTCGAGGCCCTGG
TGGCCGCATGTCTCAAAGAAGAGAAATATCTGAAGATGGGAAGGAGCTATTGTTCGATCATGGTGCTCCATTTTTTAGTGCGAGCAACAGTGATGTCTTG
AGGCTTGTTCATGAATGGGAATCTAAAGGTCTTGTTGAAGAATGGAAAGAGAATTGTGGCTCTTTTGATTGCATCTCCAAGAAATTTCTTGACATTGAAC
AGGAAGCACCAAACAAGAAATATGTTGGTATACCGGGCATGAATTCTATCTGTAAAGCATTATGCAATGAGACTGGAGTGGAAAGTAAGTTTGGTGTTAG
TATTGGGAGGTTGGAGTGTTTAGATGATGAAAAATGGTCTCTGACGGGTTTGGATGGTCAAAATCTTGGTCGTTTTAGTGGAGTGGTTGTGTCTGACAAA
GGCATAGCTTCTCCAAGATTTACAGATGTGACAGGACGTCCACCACCTCTTGATTTGAGTTTGACTCCAGAGTTGGCATTGAAGTTACAGGATATTCCTG
TTAGTCCATGCTTTGCTCTTATGCTAGCATTTTCGGAGCCCTTGTCTTCAATATCTGTAAAGGGCTTCTCATTTAAAAATTCTGAAATTTTAAGCTGGAG
TCATTGTGACAGCAGCAAGCCTGGTCGTTCAACTGCGAGTGAACGATGGGTATTACATTCAACAGCAAATTATGCAAGAGGCATAATTGCTCAAACTGGC
CTTCAGAAGCCTTCAAGCGCAACATTAACAAAAGTAGCTGAAGAATTGTTTCAAGAATTCCAAAGCATTGGGCTCAATATCCCTCGGCCATTTTTTATGA
AAGCTCATAGATGGGGAAGTGCTTTCCCAACTGCGAGCATAGCGAGGGAGCAGAAATGTCTTTGGGATAGGAAGAAGAGATTGGCCATCTGTGGAGATTT
TTGTGTGAGTCCAAATGTCGAAGGTGCGATTCTTAGTGGCCTGGCTGCTGCTTCAAAGCTTACGGAAATGCTTAGTTGCTTATAA
AA sequence
>Potri.001G438500.2 pacid=42791900 polypeptide=Potri.001G438500.2.p locus=Potri.001G438500 ID=Potri.001G438500.2.v4.1 annot-version=v4.1
MTITTINYKLLPFCLCKSDPSIDTTTMSNVATKVAVVGGGISGAVCASTLAKNGISVTLFESARGPGGRMSQRREISEDGKELLFDHGAPFFSASNSDVL
RLVHEWESKGLVEEWKENCGSFDCISKKFLDIEQEAPNKKYVGIPGMNSICKALCNETGVESKFGVSIGRLECLDDEKWSLTGLDGQNLGRFSGVVVSDK
GIASPRFTDVTGRPPPLDLSLTPELALKLQDIPVSPCFALMLAFSEPLSSISVKGFSFKNSEILSWSHCDSSKPGRSTASERWVLHSTANYARGIIAQTG
LQKPSSATLTKVAEELFQEFQSIGLNIPRPFFMKAHRWGSAFPTASIAREQKCLWDRKKRLAICGDFCVSPNVEGAILSGLAAASKLTEMLSCL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G56000 FAD/NAD(P)-binding oxidoreduct... Potri.001G438500
[exp]
0 1
AT2G20540 MEF21 mitochondrial editing factor ... Potri.001G471600
[exp]
22.53 0.8484
Potri.001G027600
[exp]
28.89 0.8470
AT4G25040 Uncharacterised protein family... Potri.012G104300
[exp]
59.46 0.8303
AT4G11120 translation elongation factor ... Potri.014G172300
[exp]
76.94 0.7579
AT4G06634 C2H2ZnF zinc finger (C2H2 type) family... Potri.004G221700
[exp]
114.94 0.7725
AT5G23690 Polynucleotide adenylyltransfe... Potri.012G105000
[exp]
134.29 0.7632
Potri.010G114100
[exp]
145.39 0.7628
AT1G16590 REV7, ATREV7 DNA-binding HORMA family prote... Potri.001G439000
[exp]
145.92 0.7647 REV7.2
AT1G18490 Protein of unknown function (D... Potri.015G055600
[exp]
160.62 0.7833
AT5G23200 unknown protein Potri.005G092100
[exp]
204.74 0.7766

Potri.001G438500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.