Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79050 609 / 0 recA DNA recombination family protein (.1.2) AT2G19490 256 / 7e-81 recA DNA recombination family protein (.1) AT3G10140 176 / 1e-50 RECA3 RECA homolog 3 (.1) AT3G32920 157 / 1e-45 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G20850 48 / 9e-06 ATRAD51 RAS associated with diabetes protein 51 (.1) AT3G22880 47 / 1e-05 ARLIM15, ATDMC1 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G067900 [exp] 253 / 6e-80 AT2G19490 547 / 0.0 recA DNA recombination family protein (.1) Potri.006G148700 [exp] 248 / 3e-78 AT2G19490 535 / 0.0 recA DNA recombination family protein (.1) Potri.016G057700 [exp] 183 / 2e-53 AT3G10140 423 / 2e-147 RECA homolog 3 (.1) Potri.006G048000 [exp] 174 / 3e-50 AT3G10140 427 / 5e-149 RECA homolog 3 (.1) Potri.006G135200 [exp] 48 / 6e-06 AT5G20850 622 / 0.0 RAS associated with diabetes protein 51 (.1) Potri.010G081500 [exp] 47 / 2e-05 AT3G22880 613 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026204 [exp] 611 / 0 AT1G79050 642 / 0.0 recA DNA recombination family protein (.1.2) Lus10042462 [exp] 611 / 0 AT1G79050 637 / 0.0 recA DNA recombination family protein (.1.2) Lus10021585 [exp] 248 / 6e-78 AT2G19490 545 / 0.0 recA DNA recombination family protein (.1) Lus10017151 [exp] 245 / 8e-77 AT2G19490 538 / 0.0 recA DNA recombination family protein (.1) Lus10018037 [exp] 162 / 1e-44 AT3G10140 385 / 2e-131 RECA homolog 3 (.1) Lus10042033 [exp] 158 / 2e-44 AT3G10140 378 / 4e-130 RECA homolog 3 (.1) Lus10039928 [exp] 42 / 0.0007 AT5G20850 530 / 0.0 RAS associated with diabetes protein 51 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00154 [poplar] [flax] RecA recA bacterial DNA recombination protein
Representative CDS sequence Show only first row Show all	>Potri.001G438900.1 pacid=42793162 polypeptide=Potri.001G438900.1.p locus=Potri.001G438900 ID=Potri.001G438900.1.v4.1 annot-version=v4.1 ATGGATTCATTGGCAATTCTAAAACCCATCACTACAATCCACCATTTCCCTTCAAAGTCCACACCTTTTCACCCTTCCCTCCCTCTCTACTTCCAGTTCT CTCGCGTTTGTTTCAAAACCTCACATTTTGCTGCAGTTAAAAAGAAACCTAAGGAAATTCGCTGTGAATTTGATAGCAAAGTTAATGGCTCTCCTCTTTC TTCAGACTTGGACGCTCGTTTCCTTGACAAGCAAAAGGCATTGGAAGCAGCGATGAATGACATAAATAACTCGTTTGGAAAGGGGAGTGTTACAAGATTG GGGAGTGCTGGTGGAGCATTGGTTGAGACTTTTCCCAGTGGCTGTTTGACACTTGATTTTGCGTTAGGTGGTGGTCTCCCCAAAGGGAGAATTGTAGAGA TATTTGGTCCAGAAAGTAGTGGAAAAACCACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAGTTTGGAGGCCATGCTATGCTTGTTGATGCAGAGCA CGCATTTGATCCAGCATATTCAAAAGCATTGGGAGTGGATGTAGAAAATTTGATTGTCTGTCAACCTGATAATGGCGAGATGGCACTTGAAATTGCAGAT CGTATGTGCAGGTCTGGTGCTGTAGATCTTATCTGTGTTGATTCTGTATCAGCTCTCACTCCAAGAGCAGAGATTGAAGGTGAGATTGGGATGCAGCAAA TAGGTTTGCAAGCACGCCTTATGAGTCAGGCATTGCGTAAAATGTCAGGAAATGCTTCCAAAGCTGGCTGTACACTCATTTTCCTTAATCAAATAAGATA TAAGATTGGTGTATATTATGGGAATCCAGAAGTGACAAGTGGAGGAATAGCCTTAAAATTTTTTGCCTCAGTTCGTCTTGAAATACGTTCTACTGGGAAG ATAAAATCAGTTAAAGGAGATGAAGATGTAGGGGTTCGTGTTCGTGTAAGAGTGCAGAAGAGTAAGGTCTCAAGACCGTACAAGCAAGCCGAGTTTGAAA TTATATTTGGAGAGGGAGTGAGTCAACTGGGTTGCATTTTGGACTGTGCTGAAATGATGGATGTTGTGGTAAAGAAAGGTTCTTGGTATAGCTATGGGGA TCATAGGTTGGGACAAGGAAGAGACAAAGCATTACAGTACTTGAGAGACAATCCTCATCTTCAGGAAGAAATAGAGAAGAAAGTTCGATCCACTATGACT GATGGAACAGTAAATATGGGCACTCCACAAGCGAGGAACATGCCAGTGCCTCTTCAAGATGAAAATGTTTACGATGATATTTGA
AA sequence Show only first row Show all	>Potri.001G438900.1 pacid=42793162 polypeptide=Potri.001G438900.1.p locus=Potri.001G438900 ID=Potri.001G438900.1.v4.1 annot-version=v4.1 MDSLAILKPITTIHHFPSKSTPFHPSLPLYFQFSRVCFKTSHFAAVKKKPKEIRCEFDSKVNGSPLSSDLDARFLDKQKALEAAMNDINNSFGKGSVTRL GSAGGALVETFPSGCLTLDFALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKFGGHAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEMALEIAD RMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGK IKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSQLGCILDCAEMMDVVVKKGSWYSYGDHRLGQGRDKALQYLRDNPHLQEEIEKKVRSTMT DGTVNMGTPQARNMPVPLQDENVYDDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79050			recA DNA recombination family ...		Potri.001G438900 [exp]	0	1
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Potri.001G407800 [exp]	1.41	0.9275
AT5G58800			Quinone reductase family prote...		Potri.009G044400 [exp]	2.44	0.9018
AT5G56350			Pyruvate kinase family protein...		Potri.013G060400 [exp]	2.44	0.9075
AT3G07700			Protein kinase superfamily pro...		Potri.014G168600 [exp]	13.96	0.8920
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.013G026600 [exp]	16.52	0.8784
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Potri.003G139800 [exp]	19.74	0.8421	Pt-OXA1.1
AT1G11360			Adenine nucleotide alpha hydro...		Potri.013G150200 [exp]	21.16	0.8748
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Potri.005G181600 [exp]	23.45	0.8697
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.016G115500 [exp]	25.49	0.8827	CAX3.2
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.001G051600 [exp]	26.07	0.8478	Pt-CHS.2,CHS3

Compare expression of checked genes

Potri.001G438900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.