Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	REV7.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16590 301 / 8e-105 REV7, ATREV7 DNA-binding HORMA family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G142501 [exp] 134 / 6e-41 AT1G16590 106 / 5e-30 DNA-binding HORMA family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006836 [exp] 265 / 4e-90 AT1G16590 241 / 9e-81 DNA-binding HORMA family protein (.1) Lus10037584 [exp] 228 / 1e-76 AT1G16590 209 / 6e-69 DNA-binding HORMA family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0651 [poplar] [flax] Mad2 PF02301 [poplar] [flax] HORMA HORMA domain
Representative CDS sequence Show only first row Show all	>Potri.001G439000.1 pacid=42788960 polypeptide=Potri.001G439000.1.p locus=Potri.001G439000 ID=Potri.001G439000.1.v4.1 annot-version=v4.1 ATGGACAGTAAGAATAATCAATCTCCTACATCTAGAATTTTAGTTGAGTTCTTGGAAGTGGCAATTACTTCAGTAGTTTTCCTCAAAGGAGTTTATCCTT CTGATGCATTTGAGAGGAGGAGGTATATGAACGTTGTAGTGCAGAGAGCTAGGCATCCACAGCTTAGAGATTATATTCACTCTGCTGTTTCTGGGCTTCT TCCTTTTATCCAAAAGGGACTGGTGGAGAGAGTAGCTGTAATTTTCTTTAACACTGATAACATCCCACTGGAGAGATTCATTTTCAAGCTCGCAATGGAC CAGTCTTATGGCTCAAAAGTGGAAGAAGGTGACTTGGAGTTTTCTCTTAGATCATTCTTGGTCAAACTCTCTGTCTCAGAAGGTCTTACCAAGGTTCTTC CCCGAGATTGCAGGTGGGAGATAACTGCTTATTTTCGCTCCCTCCCTCATGTTAGCACAAGCAAGGTTGCAGATTTATGGATACCAACAGACACAAAACA GTGGCAGCAACCTTCACTAATAACACCAATCAAATCCATGAGTAGTGAACCTCTGTCTGTGCAGTTATATTTGGAACATCCTAGCTTATCTGAACCAAAG CCTCAAGAGAAGAAGATTTTATAG
AA sequence Show only first row Show all	>Potri.001G439000.1 pacid=42788960 polypeptide=Potri.001G439000.1.p locus=Potri.001G439000 ID=Potri.001G439000.1.v4.1 annot-version=v4.1 MDSKNNQSPTSRILVEFLEVAITSVVFLKGVYPSDAFERRRYMNVVVQRARHPQLRDYIHSAVSGLLPFIQKGLVERVAVIFFNTDNIPLERFIFKLAMD QSYGSKVEEGDLEFSLRSFLVKLSVSEGLTKVLPRDCRWEITAYFRSLPHVSTSKVADLWIPTDTKQWQQPSLITPIKSMSSEPLSVQLYLEHPSLSEPK PQEKKIL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16590		REV7, ATREV7	DNA-binding HORMA family prote...		Potri.001G439000 [exp]	0	1	REV7.2
AT5G27280			Zim17-type zinc finger protein...		Potri.002G015900 [exp]	7.74	0.8352
AT2G04230			FBD, F-box and Leucine Rich Re...		Potri.004G020200 [exp]	22.22	0.7939
AT3G10350			P-loop containing nucleoside t...		Potri.008G037100 [exp]	24.18	0.8156
AT4G18960	MADS	AG	AGAMOUS, K-box region and MADS...		Potri.004G064300 [exp]	44.18	0.8117
AT5G51040			unknown protein		Potri.015G108300 [exp]	77.03	0.7726
AT5G10070			RNase L inhibitor protein-rela...		Potri.005G080300 [exp]	82.78	0.7265
AT4G21580			oxidoreductase, zinc-binding d...		Potri.004G036100 [exp]	92.56	0.7665
AT5G60750			CAAX amino terminal protease f...		Potri.001G097500 [exp]	96.93	0.7608
AT1G75670			DNA-directed RNA polymerases (...		Potri.002G024601 [exp]	104.23	0.7778
AT3G09390		ATMT-K, ATMT-1,...	ARABIDOPSIS THALIANA METALLOTH...		Potri.006G085200 [exp]	104.49	0.7880

Compare expression of checked genes

Potri.001G439000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.