Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12920 256 / 1e-83 BRG3 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) AT1G79110 240 / 6e-77 BRG2 BOI-related gene 2, zinc ion binding (.1.2) AT5G45100 189 / 5e-58 BRG1 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT4G19700 178 / 2e-53 BOI, RING Botrytis Susceptible1 Interactor, SBP (S-ribonuclease binding protein) family protein (.1) AT1G60610 89 / 1e-19 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2), SBP (S-ribonuclease binding protein) family protein (.3) AT1G45976 87 / 3e-19 SBP1 S-ribonuclease binding protein 1 (.1) AT1G10650 85 / 8e-19 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT1G32740 79 / 3e-16 SBP (S-ribonuclease binding protein) family protein (.1) AT4G35070 76 / 1e-15 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT5G47050 72 / 5e-14 SBP (S-ribonuclease binding protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G142700 [exp] 517 / 0 AT3G12920 233 / 1e-74 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Potri.012G119200 [exp] 256 / 1e-83 AT5G45100 244 / 1e-79 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.015G118000 [exp] 236 / 7e-76 AT5G45100 259 / 2e-85 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.003G085800 [exp] 96 / 2e-22 AT1G32740 220 / 9e-70 SBP (S-ribonuclease binding protein) family protein (.1) Potri.010G042200 [exp] 94 / 1e-21 AT1G10650 393 / 2e-137 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.012G082200 [exp] 94 / 2e-21 AT1G10650 266 / 2e-87 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.001G148600 [exp] 93 / 4e-21 AT1G32740 221 / 4e-70 SBP (S-ribonuclease binding protein) family protein (.1) Potri.014G027000 [exp] 92 / 6e-21 AT1G45976 380 / 2e-132 S-ribonuclease binding protein 1 (.1) Potri.002G124700 [exp] 86 / 7e-19 AT1G45976 378 / 2e-131 S-ribonuclease binding protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031202 [exp] 279 / 2e-92 AT3G12920 255 / 3e-83 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Lus10031780 [exp] 278 / 3e-92 AT3G12920 260 / 3e-85 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Lus10018294 [exp] 196 / 5e-60 AT5G45100 266 / 3e-88 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10040613 [exp] 176 / 4e-52 AT5G45100 264 / 3e-87 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10014118 [exp] 100 / 6e-25 AT4G35070 171 / 7e-54 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10019790 [exp] 96 / 2e-23 AT4G35070 170 / 1e-53 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10029136 [exp] 92 / 4e-21 AT1G10650 314 / 7e-107 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10030891 [exp] 91 / 1e-20 AT1G10650 275 / 1e-92 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10013027 [exp] 91 / 2e-20 AT1G10650 382 / 3e-133 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10001131 [exp] 89 / 1e-19 AT1G45976 407 / 7e-143 S-ribonuclease binding protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.001G439600.1 pacid=42789682 polypeptide=Potri.001G439600.1.p locus=Potri.001G439600 ID=Potri.001G439600.1.v4.1 annot-version=v4.1 ATGGCCGTTGAAGCCAGGCACCTCAATCTCTTCCCTCCTCAACTCTTAAGCAACAGGGAAATGATGATGAACCCCATTGAAGCAGATACATATATGTACA ACACCCAGATGGGATATGGTGTGCCATTATCAGGAACTACAACAACAGCAGAGACAGTGCTTCCTATGTATAGCTCTGTGATCACTGATTCAATCCCTCA TAAAACGCAAATCAAATCAGAAAGTGGTCTCACTTACAATCTCCCTGTACAGAGGAAGCGCCCAAGAGACACCATCAATCCTCTCCTCTCATATCCAATT CCAGTACAGTCCACTAAGACTTGCACTCCCTTCTCCTTTCTTGGCCAGGACCTCTCTTTTCAGATCCAACAACAGCAATTAGACACAGATTGCCTTATTT CTCAACATATGGAGAAAGTAAGGATGGAGATAGAAGAGAAAAGGAAGAGGCAGGCAAGAAGGTTACTCGAGGCATTAGAGACAGGGATGGTGAAGCGACT AAGAGCAAAAGAAGAAGAAATCGAAAAGATAGGCAAATTAAACTGGGCCCTTGAAGAGAAAGTCAAGTCTTTATGCATGGAGAATCAAATATGGAGAGAC CTAGCGCAATCCAATGAAGCAACAGCCAATGCTCTACGTTCCAATCTTGAACAAGTCCTCGCAGCCCAGGTTAACGAAGAACGCACCCTTGGTGCAGGAT TAGATAATCAGGCAGCAGCATTAATGGACGATGCGCAATCATGCTGCGGCAGCAGCGGTGGTGATGGACCTGTTGGCGACGATGGATGGGAAGAAAGAGT GTCGGAGAGATGCACGTTAGCCAATGGGGCGCAGGATAATAAAGGTACAGGAGCAGGTAGTTGGATGTGCAGGAATTGTAACAAGGAAGAGTCATGTGTG TTGCTGTTGCCTTGCAGGCATCTGTGCTTGTGTACTGTTTGTGGGTCAAGCCTCCATACTTGCCCCATCTGTAGAGCCACCAAGAATGCTAGCGTCCATG TTAACTTGTCATGA
AA sequence Show only first row Show all	>Potri.001G439600.1 pacid=42789682 polypeptide=Potri.001G439600.1.p locus=Potri.001G439600 ID=Potri.001G439600.1.v4.1 annot-version=v4.1 MAVEARHLNLFPPQLLSNREMMMNPIEADTYMYNTQMGYGVPLSGTTTTAETVLPMYSSVITDSIPHKTQIKSESGLTYNLPVQRKRPRDTINPLLSYPI PVQSTKTCTPFSFLGQDLSFQIQQQQLDTDCLISQHMEKVRMEIEEKRKRQARRLLEALETGMVKRLRAKEEEIEKIGKLNWALEEKVKSLCMENQIWRD LAQSNEATANALRSNLEQVLAAQVNEERTLGAGLDNQAAALMDDAQSCCGSSGGDGPVGDDGWEERVSERCTLANGAQDNKGTGAGSWMCRNCNKEESCV LLLPCRHLCLCTVCGSSLHTCPICRATKNASVHVNLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Potri.001G439600 [exp]	0	1
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Potri.016G070200 [exp]	6.48	0.9015	Pt-DGD1.3
AT5G20190			Tetratricopeptide repeat (TPR)...		Potri.018G130100 [exp]	6.70	0.9122
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Potri.014G091800 [exp]	6.92	0.9006
AT5G47740			Adenine nucleotide alpha hydro...		Potri.015G083100 [exp]	7.34	0.8592
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Potri.012G044900 [exp]	9.79	0.9134
AT5G22090			Protein of unknown function (D...		Potri.009G016600 [exp]	13.49	0.9014
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Potri.009G125600 [exp]	17.88	0.9092
AT3G52740			unknown protein		Potri.004G203000 [exp]	18.70	0.9068
AT1G56600		ATGOLS2	galactinol synthase 2 (.1)		Potri.013G005900 [exp]	27.69	0.8932
AT5G19875			unknown protein		Potri.001G231300 [exp]	28.77	0.8984

Compare expression of checked genes

Potri.001G439600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.