Plant FIBer expression Database

Potri.001G439825 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G439825.1 pacid=42787951 polypeptide=Potri.001G439825.1.p locus=Potri.001G439825 ID=Potri.001G439825.1.v4.1 annot-version=v4.1
ATGCATGATTCCTGTTGTTCCTCATTCACACAAGGAATGATCCACGTTCTCTGGCTTTATAAAATCCAGAGAAAGGAGAAGAAGTGGGGGGCAGAACAAC
ACAGGAGCTGGAAAAACAAAGAAAAATTAGACGAAGACATGGAGGAAGAGCGAAACAGAGAGGGGAGGACAACGAACGAAGAACGACGAAAAAACAGGAC
CAGCAACAAGGGGAGAAACCCAGAAACAGATACAGGGGAGCCGAGAACCAGCAAAAAAAAATCCAGTACAATTCACGAAGAACGGGAGGACGAAAACACA
GACACAAACGGGAGGGCTTGGAAGCTGAGAAAAGTCGTAAGAAAACAAAAGGAGAACCCGAAAGCGCCGACAGACGAAGAAGAGAATCACCATATTCTTC
AAACGCCAGCTTCGCCTCTAATTAGCCCAGGTAGAGGTGAAGTGAGGGATATCCTGGACCAAAAGGACCGACTTGAGGAGCAAGATAATGTGAAGCCATA
TAATATTCCATCATTTTCTCTGAATTCCACCTATTTTTTTTTTAATATGGCTTTCTTTTTTTCTTTTAATTTGGCTACCCTCTCCTCGACCTGTTCTAGG
ATCCTCAATTAG
AA sequence
>Potri.001G439825.1 pacid=42787951 polypeptide=Potri.001G439825.1.p locus=Potri.001G439825 ID=Potri.001G439825.1.v4.1 annot-version=v4.1
MHDSCCSSFTQGMIHVLWLYKIQRKEKKWGAEQHRSWKNKEKLDEDMEEERNREGRTTNEERRKNRTSNKGRNPETDTGEPRTSKKKSSTIHEEREDENT
DTNGRAWKLRKVVRKQKENPKAPTDEEENHHILQTPASPLISPGRGEVRDILDQKDRLEEQDNVKPYNIPSFSLNSTYFFFNMAFFFSFNLATLSSTCSR
ILN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G439825
[exp]
0 1
Potri.005G096332
[exp]
6.00 0.9140
Potri.011G073291
[exp]
6.92 0.9134
AT3G23000 PKS7, ATSRPK1, ... SNF1-RELATED PROTEIN KINASE 3.... Potri.008G160200
[exp]
8.12 0.8214 CIPK4.1
AT5G13210 Uncharacterised conserved prot... Potri.003G165200
[exp]
11.18 0.8435
Potri.005G096266
[exp]
11.22 0.8973
Potri.019G120766
[exp]
11.48 0.8980
AT2G21150 XCT XAP5 CIRCADIAN TIMEKEEPER, XAP... Potri.009G129700
[exp]
13.49 0.8309
Potri.012G009345
[exp]
14.83 0.8862
Potri.019G025833
[exp]
16.24 0.8899
Potri.019G025866
[exp]
18.16 0.8866

Potri.001G439825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.