Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36110 382 / 6e-129 CYP716A1 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) AT2G42850 244 / 3e-75 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) AT3G19270 218 / 2e-65 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT2G29090 217 / 8e-65 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT5G45340 216 / 8e-65 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G19230 210 / 2e-62 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G36140 194 / 5e-58 CYP716A2 "cytochrome P450, family 716, subfamily A, polypeptide 2", cytochrome P450, family 716, subfamily A, polypeptide 2 (.1) AT5G36130 185 / 9e-57 Cytochrome P450 superfamily protein (.1) AT5G05690 188 / 3e-54 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT4G36380 181 / 8e-51 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G155600 [exp] 792 / 0 AT5G36110 388 / 4e-131 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.006G085500 [exp] 469 / 7e-163 AT5G36110 573 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.007G002400 [exp] 458 / 1e-158 AT5G36110 585 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.018G149300 [exp] 449 / 6e-155 AT5G36110 585 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.018G134000 [exp] 446 / 1e-153 AT5G36110 559 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.001G003100 [exp] 441 / 4e-152 AT5G36110 424 / 2e-145 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.001G003000 [exp] 439 / 6e-151 AT5G36110 389 / 3e-131 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.013G106200 [exp] 436 / 2e-149 AT5G36110 492 / 2e-171 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.013G106100 [exp] 431 / 7e-148 AT5G36110 470 / 4e-163 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040055 [exp] 278 / 2e-88 AT5G36110 318 / 7e-104 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Lus10010940 [exp] 246 / 8e-76 AT2G42850 571 / 0.0 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) Lus10035685 [exp] 219 / 7e-66 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10021725 [exp] 217 / 4e-65 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10042652 [exp] 216 / 2e-64 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10034768 [exp] 212 / 4e-63 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10033308 [exp] 212 / 7e-63 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10018898 [exp] 200 / 2e-58 AT5G45340 301 / 3e-97 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10028594 [exp] 198 / 1e-57 AT5G45340 299 / 1e-96 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10012675 [exp] 194 / 6e-56 AT3G19270 586 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.001G440200.1 pacid=42787771 polypeptide=Potri.001G440200.1.p locus=Potri.001G440200 ID=Potri.001G440200.1.v4.1 annot-version=v4.1 ATGGAGCTAACATTTCTATTGTTATCTCTAGCTCCATTGGTCCTACTACTTGTTATTAGCATCTTTGCTTTCAAGTACTCATCCCGTAGTGCCAAAAACC TGCCACCAGGGAGCCTGGGCTGGCCTATCTTTGGCGAAACACTCGAATTCTTGTTTGGTAAGCCCGAAGAGTTTGTGTTTCACAGGATGAAGAAGTACTC TTCTGATATCTTCAAGACCAAGATTCTTGGAGAGGAGACTGTGGTGATGTGTGGTCCTGATGGACACAAATATCTCTTCACCAACGAGCAGAAACTTTTC ACTGTATTTCGAACTCATTCGATGCAGAAGCTCTTTCTTTCCGATGAAGCTTCTGCTCCGATTGAAATTACACGCGAAGCTGAGTCTAAAATCATAAGAT CACCTGGGTTCTTGAAGCCTGAGGCATTGGTCAGGTACTTGGGGAAAATGGACTCCATTACACAGCAGAAAATGCAAGCTTATTGGGAAGGAAAAGATGA AGTCAAGGTCTTTCCTTTCGCGAAGACACTGACTCTGTCTCTTGCCTGCCGCTTTTTCTTGGGCTCTGATGATCCTGAACGTATAGCCAGGCTTGTCAGC AATTTTGATGATGTAACCCTAGGGATGCATTCCATTCCTTTGAATTTCCCTGGAACAACTTTTTACAGGGCTAACAAGGCTGCAGCTGCAATCCGCGAGG AGCTACGATTAGTCATCAGTGAGAAAAGAGCCATTATGGCCGAAGGAGCACAGGTGCAGGATGTACTATGCCATATGATCTTGGCCACGGACCCTTCAGG CAAACACATGGCAGAAGCTGAGATTGCTGGCATGATGATGGGTTTACTAGTTGCAGGATATAGTACAGTGGCTACTGCTATGACATTCTTTATGAAATAT GTTGGACAGAGGCCTGACATTTATGCTAAGATCCTAGCTGAGCAAACAGAGATTGCAACAGCTAAAAAGGCAGGAGAGGTACTAGACTGGAATGACATTC AGAAGATGAAGTACTCATGGAATGTAGTCTATGAAGTGATGAGGCTCACACCTCCAATCCAGGGAACTTTCAGAGAGGCCTTGACTGATGTTACTTATGC AGGATACACCATTCCAAAGGGATGGAAAATATACTGGACAGTCAGCACAACAAACAAGAATCCAAAGTACTTCCCAGATCCTGAAAAGCTTGACCCATCT AGACACGAAGACGGAAAGGCCTTTCCTCCGTTCACGTTCGTGCCTTTCGGAGCTGGACCTAGAATGTGCCCTGGAAAAGAGTATGCTCGACTAGCAATTC TGACTTTTGTTCACAACGTCGTCAAGAGGTATAAGTGGGAGGTCGTGTTTCCTGAAGAAAAGATCGTTGGTGATATGATGCCAAGTCCTGAAAAGGGACT TCCAATTCGCCTTCAATCGCACTGA
AA sequence Show only first row Show all	>Potri.001G440200.1 pacid=42787771 polypeptide=Potri.001G440200.1.p locus=Potri.001G440200 ID=Potri.001G440200.1.v4.1 annot-version=v4.1 MELTFLLLSLAPLVLLLVISIFAFKYSSRSAKNLPPGSLGWPIFGETLEFLFGKPEEFVFHRMKKYSSDIFKTKILGEETVVMCGPDGHKYLFTNEQKLF TVFRTHSMQKLFLSDEASAPIEITREAESKIIRSPGFLKPEALVRYLGKMDSITQQKMQAYWEGKDEVKVFPFAKTLTLSLACRFFLGSDDPERIARLVS NFDDVTLGMHSIPLNFPGTTFYRANKAAAAIREELRLVISEKRAIMAEGAQVQDVLCHMILATDPSGKHMAEAEIAGMMMGLLVAGYSTVATAMTFFMKY VGQRPDIYAKILAEQTEIATAKKAGEVLDWNDIQKMKYSWNVVYEVMRLTPPIQGTFREALTDVTYAGYTIPKGWKIYWTVSTTNKNPKYFPDPEKLDPS RHEDGKAFPPFTFVPFGAGPRMCPGKEYARLAILTFVHNVVKRYKWEVVFPEEKIVGDMMPSPEKGLPIRLQSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.001G440200 [exp]	0	1
AT5G51790	bHLH	bHLH120	basic helix-loop-helix (bHLH) ...		Potri.015G134400 [exp]	1.41	0.9411
					Potri.012G120952 [exp]	2.23	0.9414
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.003G025100 [exp]	2.44	0.9258
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.007G119400 [exp]	3.16	0.9047
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.018G145522 [exp]	3.46	0.9395
AT4G35160			O-methyltransferase family pro...		Potri.019G093000 [exp]	4.24	0.9189
					Potri.012G120768 [exp]	7.93	0.9213
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.001G294100 [exp]	15.55	0.9023
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.001G063700 [exp]	16.12	0.8939
AT3G61930			unknown protein		Potri.002G179000 [exp]	16.49	0.8860

Compare expression of checked genes

Potri.001G440200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.