Plant FIBer expression Database

Potri.001G440250 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G440250.1 pacid=42789286 polypeptide=Potri.001G440250.1.p locus=Potri.001G440250 ID=Potri.001G440250.1.v4.1 annot-version=v4.1
ATGGCATTAATGGAGAAACCGGGGGCGACGGCCAAGAATATCAAGAATTCTGGAAATAAAAACCAGCACCATCCAGTAGCCAAAGTTTTCCTGACCATAC
CAGACCCAACAGCCAACAAAGCTCTCTCCCAAATCAAGCAAGCCCCCACAAAAACAAACCCCACTGTCTTCCTCAAATCACCCATCCATTCACCATCTGC
AAACAAATCATGTAGCCTCCTTTTCACTATTGTTCACGGCAACTCTCAAGGTGACAGCCTCTCATTAACCCAGAATAGGAACAACAGTGGGGGAGAATTT
CAGGGAACAAGACAAGGAGGATACACAAGCTTGCAGCCAACAAAGGGGCAATCCAGATCAGTCAAGGAAAAACCGTTGCTCTTGGAAAATTTAATTGTTT
TTCTTGTTTTGTTTCAATCAAAGCACTGA
AA sequence
>Potri.001G440250.1 pacid=42789286 polypeptide=Potri.001G440250.1.p locus=Potri.001G440250 ID=Potri.001G440250.1.v4.1 annot-version=v4.1
MALMEKPGATAKNIKNSGNKNQHHPVAKVFLTIPDPTANKALSQIKQAPTKTNPTVFLKSPIHSPSANKSCSLLFTIVHGNSQGDSLSLTQNRNNSGGEF
QGTRQGGYTSLQPTKGQSRSVKEKPLLLENLIVFLVLFQSKH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G440250
[exp]
0 1
AT1G51940 protein kinase family protein ... Potri.008G187500
[exp]
6.08 0.8219
AT3G61550 RING/U-box superfamily protein... Potri.014G091000
[exp]
12.60 0.7773
AT3G55820 Fasciclin-like arabinogalactan... Potri.008G065101
[exp]
25.59 0.7738
AT5G62220 ATGT18 glycosyltransferase 18 (.1) Potri.015G132600
[exp]
28.39 0.7290
AT1G02180 ferredoxin-related (.1) Potri.002G136000
[exp]
29.66 0.7408
AT3G10300 Calcium-binding EF-hand family... Potri.016G043600
[exp]
35.98 0.7617
AT2G45760 BAL, BAP2 BON ASSOCIATION PROTEIN 1-LIKE... Potri.001G108300
[exp]
36.18 0.7390
AT5G63140 ATPAP29, PAP29 purple acid phosphatase 29 (.1... Potri.002G183000
[exp]
36.78 0.7482
AT4G37260 MYB ATMYB73 myb domain protein 73 (.1) Potri.002G122600
[exp]
40.47 0.7578
AT1G04280 P-loop containing nucleoside t... Potri.008G162000
[exp]
41.49 0.7623

Potri.001G440250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.