Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20430 1107 / 0 Subtilase family protein (.1.2) AT5G44530 1079 / 0 Subtilase family protein (.1) AT1G30600 1026 / 0 Subtilase family protein (.1) AT2G19170 603 / 0 SLP3 subtilisin-like serine protease 3 (.1) AT4G30020 592 / 0 PA-domain containing subtilase family protein (.1) AT1G62340 472 / 4e-154 ALE1 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) AT4G34980 261 / 3e-75 SLP2 subtilisin-like serine protease 2 (.1) AT5G67360 259 / 6e-75 ARA12 Subtilase family protein (.1) AT4G10550 252 / 2e-72 Subtilase family protein (.1.2.3) AT3G14240 249 / 8e-71 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G155400 [exp] 1450 / 0 AT4G20430 1143 / 0.0 Subtilase family protein (.1.2) Potri.006G076200 [exp] 614 / 0 AT2G19170 1342 / 0.0 subtilisin-like serine protease 3 (.1) Potri.018G143400 [exp] 612 / 0 AT4G30020 1338 / 0.0 PA-domain containing subtilase family protein (.1) Potri.001G151100 [exp] 555 / 0 AT2G19170 615 / 0.0 subtilisin-like serine protease 3 (.1) Potri.011G010700 [exp] 321 / 5e-100 AT1G62340 631 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Potri.004G173900 [exp] 265 / 8e-77 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G026600 [exp] 259 / 8e-75 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.002G256300 [exp] 259 / 2e-74 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.011G150900 [exp] 254 / 6e-73 AT1G32960 744 / 0.0 Subtilase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023389 [exp] 1224 / 0 AT4G20430 1173 / 0.0 Subtilase family protein (.1.2) Lus10038416 [exp] 1216 / 0 AT5G44530 1169 / 0.0 Subtilase family protein (.1) Lus10008060 [exp] 1128 / 0 AT4G20430 1112 / 0.0 Subtilase family protein (.1.2) Lus10006973 [exp] 583 / 0 AT4G30020 1334 / 0.0 PA-domain containing subtilase family protein (.1) Lus10040146 [exp] 527 / 2e-175 AT2G19170 655 / 0.0 subtilisin-like serine protease 3 (.1) Lus10001310 [exp] 525 / 3e-175 AT4G30020 1258 / 0.0 PA-domain containing subtilase family protein (.1) Lus10001006 [exp] 525 / 5e-175 AT2G19170 629 / 0.0 subtilisin-like serine protease 3 (.1) Lus10000960 [exp] 522 / 1e-173 AT4G30020 658 / 0.0 PA-domain containing subtilase family protein (.1) Lus10015559 [exp] 449 / 4e-145 AT1G62340 903 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Lus10011018 [exp] 359 / 6e-113 AT2G19170 445 / 3e-146 subtilisin-like serine protease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.001G440300.1 pacid=42790063 polypeptide=Potri.001G440300.1.p locus=Potri.001G440300 ID=Potri.001G440300.1.v4.1 annot-version=v4.1 ATGGGAGGTGTGTACTTGGTGCATTTAGTGGTAATGGTGCTTAGTTTAGGGGTATTAGCAGGCACTTTGTGTCAAGTTGATGATGGTTCAGAAAATGGAA CTACAGCTGTTTACATTGTTACTCTTAAACAAGCTCCTGCTTCTCATTACTATGGAGAGCTTAGAAAGAATACTAATGTTTTTAAGCATGGCGTTCCTAG GAATCCAAAGCAATCTCACAACCCAAGGAATGATTCGAGATCCAATCAGAGTTCTAGTTCGTACATTGCTCGTGTTCATGATTCATTATTGAGGAGGGTG TTGAGAGGGGAGAAATATCTCAAGCTGTACAGCTATCACTACTTGATTAATGGGTTCGCTGTTCTTGTTACCCCAGAACAGGCCAACAAGCTTTCGAGGA GGAAAGAAGTGGCAAATGTGGCTTTGGATTTCTCTGTTAGAACTGCAACCACGCATACTCCACAGTTTTTGGGTCTACCACAAGGGGCTTGGCCCAAAGC AGGTGGATATGAAACTGCTGGTGAAGGAATCGTGATCGGCTTCATTGACACAGGCATTGATCCAAGTCATCCCAGCTTTTCTGATGACTCATCTTTGAAC TCGTATCCTGTTCCTAGCCACTTCTCAGGCATTTGTGAGGTTACTCGGGATTTTCCTTCTGGTTCCTGCAATAGGAAGCTCATCGGGGCTCGTCATTTTG CTGCATCAGCTATTACCAGGGGAATTTTCAATTCGAGCCAGGACTATGCTTCACCGTTTGATGGTGATGGCCATGGAACGCATACAGCCTCTGTTGCTGC AGGAAACCATGGGATTCCAGTTATAGTTGCCAGGCATCATTTTGGAAATGCCAGTGGGATGGCTCCTCGTGCACATGTTGCTGTTTACAAGGCATTATAC AAGAGTTTTGGAGGTTTCGCTGCCGATGTTGTTGCTGCTATAGACCAGGCAGCTCAGGATGGGGTTGATGTTTTAAGTTTATCAATCACACCCAACAGGC GTCCTCCTGGTATTGCAACATTTTTTAATCCCATAGACATGGCATTGCTCTCAGCTGTGAAGGCTGGCATTTTTGCTGTGCAAGCAGCAGGCAATACTGG ACCATCGCCTAAGAGCATGTCTTCCTTCAGTCCATGGATCTTCACTGTTGGTGCAGCTTCTCATGACAGAGCCTACAGTAACTCTATAATACTTGGCAAC AATGTAACCATTCATGGAGTTGGGCTTGCTCCTGGAACACATAAAAATACCATGTTGACCCTCATTTCTGCACTTCATGCTTTGAACAACGAGACAACAG TTGCTACTGATATGTATGTGGGTGAATGTCAAGATTCTAGTAACTTCAATCAGGATTTGGTCAAAGGAAACCTCTTGATCTGCAGCTATTCAATTCGCTT TGTGCTTGGACTCTCAACAATCAAACAAGCTATAGCAACAGCCAAAAACCTCAGTGCAGCTGGTGTTGTGTTCTACATGGATCCGTTTGTTATTGGCTTT CAGCTTAATCCAATTCCAATGAGAGTGCCTGGGATCATAATTCCATCCCCAGATGATTCGAAGGTTCTACTCCAATACTACAATTCTTCTTTGGAGAGAA ATGAAACTACGAAGAAAATTACTAGATTTGGTTCTGTTGCAAGCATTTTAGGTGGACTAAAAGCAAACTACTCTAATTCTGCTCCCAAAGTTATGTTTTA CTCTGCTAGAGGACCAGATCCAGAAGACAATTTTCTCGATGATGCTGACATTTTGAAACCCAATTTGATAGCTCCTGGAAATCTAATATGGGCTGCATGG AGTTCACTTGGCACAGACTCGGTTGAATTTCAAGGTGAGAACTTTGCATTGATGTCTGGAACGAGTATGGCTGCTCCTCATATTGCCGGGCTTGCTGCGC TGATCAAGCAAAAGTTTCCCAGTTTCAGCCCTGCGGCAATTGCCTCTGCACTATCCACAACAGCTTCTTTATATGACAATAATGGTGGGCCAATAATGGC TCAGCGTGCTTATTCCAACCCAGATATAAATCAGTCTCCAGCTACGCCTTTCGACATGGGAAGTGGTTTTGTAAATGCAACTGCAGCTCTGGATCCGGGT TTGATTTTTGATTCAGGTTATGATGACTATATGTCATTTCTTTGTGGAATTAATGGATCTAGTCCTGTGGTATTGAACTACACAGGTCAAAATTGTTTGT CTTATAACTCAACCATCAATGGCACTGACCTGAATCTTCCCTCCATCACAATCGCTAAACTATATCAGTCTAAAACAGTCCAAAGATCAGTGACTAACAT TGCTGGCGGTGAAACATATAAAGTTGGCTGGAGTGCGCCTTATGGAGTAACCATAAAGGTGGCACCAACCCGCTTCTGTATTGCCAGTGGGGAAAGGCAA ACCTTGAGTGTGTTCTTTGACGCGAAAATGAATAGTTCTACTGCCAGCTATGGAAGGATAGGACTTTTTGGAGATCAGGGTCATGTTGTCAACATTCCAT TGTCAGTCATTGTCAAAGTCACATATAATACCACAACTAACATCTGA
AA sequence Show only first row Show all	>Potri.001G440300.1 pacid=42790063 polypeptide=Potri.001G440300.1.p locus=Potri.001G440300 ID=Potri.001G440300.1.v4.1 annot-version=v4.1 MGGVYLVHLVVMVLSLGVLAGTLCQVDDGSENGTTAVYIVTLKQAPASHYYGELRKNTNVFKHGVPRNPKQSHNPRNDSRSNQSSSSYIARVHDSLLRRV LRGEKYLKLYSYHYLINGFAVLVTPEQANKLSRRKEVANVALDFSVRTATTHTPQFLGLPQGAWPKAGGYETAGEGIVIGFIDTGIDPSHPSFSDDSSLN SYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGTHTASVAAGNHGIPVIVARHHFGNASGMAPRAHVAVYKALY KSFGGFAADVVAAIDQAAQDGVDVLSLSITPNRRPPGIATFFNPIDMALLSAVKAGIFAVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRAYSNSIILGN NVTIHGVGLAPGTHKNTMLTLISALHALNNETTVATDMYVGECQDSSNFNQDLVKGNLLICSYSIRFVLGLSTIKQAIATAKNLSAAGVVFYMDPFVIGF QLNPIPMRVPGIIIPSPDDSKVLLQYYNSSLERNETTKKITRFGSVASILGGLKANYSNSAPKVMFYSARGPDPEDNFLDDADILKPNLIAPGNLIWAAW SSLGTDSVEFQGENFALMSGTSMAAPHIAGLAALIKQKFPSFSPAAIASALSTTASLYDNNGGPIMAQRAYSNPDINQSPATPFDMGSGFVNATAALDPG LIFDSGYDDYMSFLCGINGSSPVVLNYTGQNCLSYNSTINGTDLNLPSITIAKLYQSKTVQRSVTNIAGGETYKVGWSAPYGVTIKVAPTRFCIASGERQ TLSVFFDAKMNSSTASYGRIGLFGDQGHVVNIPLSVIVKVTYNTTTNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20430			Subtilase family protein (.1.2...		Potri.001G440300 [exp]	0	1
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Potri.002G251700 [exp]	1.00	0.9270	Pt-TMKL1.1
AT4G23740			Leucine-rich repeat protein ki...		Potri.001G095200 [exp]	4.47	0.9069
AT3G54000			unknown protein		Potri.010G195800 [exp]	4.58	0.8910
AT5G10200			ARM-repeat/Tetratricopeptide r...		Potri.007G092100 [exp]	6.24	0.8825
AT2G34190			Xanthine/uracil permease famil...		Potri.011G068200 [exp]	7.07	0.9042
AT3G62110			Pectin lyase-like superfamily ...		Potri.014G112100 [exp]	8.48	0.8836
AT3G51740		IMK2	inflorescence meristem recepto...		Potri.006G104300 [exp]	10.09	0.9146	Pt-RHG1.3
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Potri.001G467600 [exp]	10.24	0.8932
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.001G217700 [exp]	10.24	0.8574
AT2G05920			Subtilase family protein (.1)		Potri.006G141200 [exp]	11.91	0.8459

Compare expression of checked genes

Potri.001G440300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.