Plant FIBer expression Database

Pt-GSNAP.2 (Potri.001G440600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-GSNAP.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G20410 368 / 6e-129 GAMMA-SNAP, GSNAP gamma-soluble NSF attachment protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G155200
[exp]
481 / 2e-173 AT4G20410 383 / 9e-135 gamma-soluble NSF attachment protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013109
[exp]
397 / 2e-140 AT4G20410 439 / 5e-157 gamma-soluble NSF attachment protein (.1)
Lus10008061
[exp]
392 / 5e-138 AT4G20410 433 / 2e-154 gamma-soluble NSF attachment protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF14938 SNAP Soluble NSF attachment protein, SNAP
Representative CDS sequence
>Potri.001G440600.1 pacid=42792048 polypeptide=Potri.001G440600.1.p locus=Potri.001G440600 ID=Potri.001G440600.1.v4.1 annot-version=v4.1
ATGCCCGTTTCCGATCCCGATAAGCTAATTACCAAGGCCGATAAGTTAACTAAACTGAGTCTTACAAGATGGAGTGCCGATTGGAGAAATGCCACTCTTT
TGTATGAAGAAGCTGCTAGCTTGTTTAGGGTCGCCAAGAAAAATGAGAAAGCAAAAGAAGCATTTGAGAAGGCTTCCAAAGGACAAGAGATGCTCTCTTC
ACCTTGGGATGCTGCTAAACACATGGAGTCTGCTGCTGCTCTAGCAAAGGAACTAGGCAACTGGAATGAAGTCACTGACTTTTATAGAAGAGCGTCTGAG
TTGTACATGGAGTGTGGGAGACCACAGCCAGCATCAGATGCTCTAGCTAAGGCTGCTCGTGCTCTGGAAGATGCTATGCCTGAAGCTGCTGTTCAGATGT
ACAATGATGCTTCTGCTATTCTTGAAGAAGATGGCAAAGAACAGATGGCCTTTGATCTATACCGTGCTGCCACTAGTGTGTATGTAAAGCTTGAAAAGTA
TAGTGATGCTGCATCTTCTTTGTTGCAATTGGGTCTAGCAGCGGATAAATGCAATGCCACCAATAGCCAGTGCAAGGCATATCTTGGTGCAATTATTGTA
TACCTTTACGCTCATGACTTCAAGCAAGCAGAGAAATGCTACAATGATTGCTCACAGGTTGATGCTTTTCTGAGAAGTGACCAGAACCGCTGTGCTAGTA
AACTGCTTTCGGCTTATACAGAAGGTGATATTGAAGAAATCAAACGTGTGGTTCAGTCCAGCACAGTTTCAAATCTTGACCATGTGGTAATCAAGCTAGC
AAGAAAGCTACCTACTGGTGATGTTAGTGCATTGAAGACTGATGTTGGCAAAGAGGAGGAAGAACCATTGGATGAGAATGACCTCACATAA
AA sequence
>Potri.001G440600.1 pacid=42792048 polypeptide=Potri.001G440600.1.p locus=Potri.001G440600 ID=Potri.001G440600.1.v4.1 annot-version=v4.1
MPVSDPDKLITKADKLTKLSLTRWSADWRNATLLYEEAASLFRVAKKNEKAKEAFEKASKGQEMLSSPWDAAKHMESAAALAKELGNWNEVTDFYRRASE
LYMECGRPQPASDALAKAARALEDAMPEAAVQMYNDASAILEEDGKEQMAFDLYRAATSVYVKLEKYSDAASSLLQLGLAADKCNATNSQCKAYLGAIIV
YLYAHDFKQAEKCYNDCSQVDAFLRSDQNRCASKLLSAYTEGDIEEIKRVVQSSTVSNLDHVVIKLARKLPTGDVSALKTDVGKEEEEPLDENDLT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G20410 GAMMA-SNAP, GSN... gamma-soluble NSF attachment p... Potri.001G440600
[exp]
0 1 Pt-GSNAP.2
AT5G62575 SDH7B, SDH7 succinate dehydrogenase 7B, su... Potri.015G072100
[exp]
1.73 0.9309
AT4G02620 vacuolar ATPase subunit F fami... Potri.005G217600
[exp]
3.46 0.9167 VATF.1
AT4G33410 ATSPPL1 SIGNAL PEPTIDE PEPTIDASE-LIKE ... Potri.012G142400
[exp]
3.46 0.8994
AT3G01390 AVMA10, VMA10 vacuolar membrane ATPase 10 (.... Potri.008G040300
[exp]
4.89 0.9104 Pt-VMA10.1
AT3G57090 FIS1A, BIGYIN FISSION 1A, Tetratricopeptide ... Potri.009G047300
[exp]
9.74 0.9007
AT5G08160 ATPK3 serine/threonine protein kinas... Potri.015G055200
[exp]
10.48 0.8893
AT5G42000 ORMDL family protein (.1.2) Potri.003G144600
[exp]
10.58 0.8197
AT5G64180 unknown protein Potri.012G022200
[exp]
10.67 0.8507
AT3G28917 ZF_HD MIF2 mini zinc finger 2 (.1) Potri.004G126600
[exp]
11.40 0.8364
AT5G09260 VPS20.2 vacuolar protein sorting-assoc... Potri.005G067700
[exp]
12.24 0.8766 ATHDH.2

Potri.001G440600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.