Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20820 552 / 0 FAD-binding Berberine family protein (.1) AT5G44440 536 / 0 FAD-binding Berberine family protein (.1) AT1G30700 526 / 0 FAD-binding Berberine family protein (.1) AT5G44400 523 / 0 FAD-binding Berberine family protein (.1) AT1G30760 519 / 0 FAD-binding Berberine family protein (.1) AT2G34790 512 / 3e-178 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT5G44410 509 / 7e-177 FAD-binding Berberine family protein (.1) AT4G20860 507 / 3e-176 FAD-binding Berberine family protein (.1) AT5G44360 506 / 1e-175 FAD-binding Berberine family protein (.1) AT5G44380 496 / 2e-171 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G162666 [exp] 800 / 0 AT5G44440 506 / 6e-176 FAD-binding Berberine family protein (.1) Potri.001G461900 [exp] 776 / 0 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462000 [exp] 776 / 0 AT5G44440 520 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158100 [exp] 775 / 0 AT5G44440 519 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461800 [exp] 774 / 0 AT5G44440 516 / 1e-179 FAD-binding Berberine family protein (.1) Potri.001G461700 [exp] 771 / 0 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162884 [exp] 771 / 0 AT4G20820 527 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461500 [exp] 769 / 0 AT4G20820 519 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162968 [exp] 767 / 0 AT4G20820 525 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012641 [exp] 624 / 0 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 623 / 0 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 585 / 0 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10026775 [exp] 580 / 0 AT5G44390 448 / 5e-153 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 570 / 0 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10001965 [exp] 563 / 0 AT5G44390 454 / 2e-155 FAD-binding Berberine family protein (.1) Lus10039682 [exp] 558 / 0 AT5G44440 481 / 9e-166 FAD-binding Berberine family protein (.1) Lus10008410 [exp] 537 / 0 AT5G44390 436 / 8e-149 FAD-binding Berberine family protein (.1) Lus10038446 [exp] 532 / 0 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 530 / 0 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF08031 [poplar] [flax] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Potri.001G440700.1 pacid=42787984 polypeptide=Potri.001G440700.1.p locus=Potri.001G440700 ID=Potri.001G440700.1.v4.1 annot-version=v4.1 ATGACTTCTCTAAGCTTTTTTCCAATGTTGTCATTCCTGTTTTTCCTTATTTTTTCATTCTCGTGGGTAACTTCAGCTCACACTCACGAGAGTTTTCTTC AATGCCTTGATTCCCAAAACTCCCACTCCATTTCTAAGCTCATTTACACCCCAATCAACTCATCATATTCATCAATCTTGCAGTTTTCTATTCAAAATCT CAGGTTCAACACAAGTTCCACCCCAAAACCTCTAGTTATTGTTACTCCCACCAACATATCCCACATTCAAGCTGCCATTATTTGTTCCCAGAAGCATGGC ATGCAAATAAGAATTCGAAGTGGTGGCCATGATTATGAAGGTCTTTCTTATGTTTCTACGTTCTCATTTGTGGTAATTGATCTAATCAATCTTCGAACAA TCAACGTTAACGCGGAGAATAAAACTGCATGGGTTCAATCTGGGGTGACAATAGGCGAGGTTTACTATAGAATTGCTGAGAAAAGCAGAACTCTTGCTTT CCCAGCAAGTGTTTGCCCTACTGTAGGTGTTGGTGGACACTTCAGTGGAGGAGGGTATGGCATGTTGATGCGTAAATATGGCCTTGCCGCAGATCACATA ATTGATGCACAATTAGTTGATGTTAAAGGTAGAATTCTCGACAGAGAATCAATGGGAGAAGATCTTTTTTGGGCCATCCGAGGTGGTGGAGGAAATACTT TTGGTGTGGTTATTGCTTGGAAAATAAGTCTAGTCTCAGCTCCACCTACTGTGACTGTTTTCAATGTTCAAAGAACACTGGAACAAAATGCTTCCAAGCT TGTCCATCGGTGGCAGTTCGTAGCGGATAAGCTTCATGAAGATCTCTTCATCAGAATTATTCTGAATAGAGTCAATTCCACTGAAGAAGGAAAGTCCAAC ACAACAATACAAGCCTCATTCAATTCATTGTTTCTTGGTGGGATTGATAGGCTTCTTCCATTGATACAAGACAGCTTTCCCGAGCTCGGTTTGGTAAAAG AAGATTGCATTGAAATGAGTTGGATTCAGTCTGTCCTCTACTTCGACGGATTCCCAAGCAACTCATCCTTGGATGTTTTGCTTGATAGAACTCCTTCAAC TAGAAGGAATTTCAAAGCGAAATCAGACTATGTCAAGGAACCTATACCCGAACTTGGATTGGAGGGGATATGGGAAAGGTTCTTCGACAAAGACATCAAC ACACCAATACTGATCTTCAGCCCTTACGGAGGAAAAATGAGTGAGATTTCAGAGTCTAGCATCCCTTTTCCACATAGAGCAGGGAACATATACAAGATTC AACACCTAATATATTGGGATGAAGAGGGGATTGTGGCAACTAAGAGGCATATAAGCTGGATCAGAAGACTCTACAGTTACTTGGCCCCTTACGTTTCAAA AACTCCTAGAGCTGCTTATGTCAATTACAGAGATCTTGACATAGGGATAAATAATCATGCAGGCAACACAAGTTATAGACAAGCAAGCATCTGGGGCCTC AAATATTTCAAGAATAATTTTGACAGATTGGTGCGTGTGAAGACTGCTGTTGATCCTGCTAATTTCTTCAGAAATGAACAAAGTATCCCACCTCTATCTT CTTGGTGA
AA sequence Show only first row Show all	>Potri.001G440700.1 pacid=42787984 polypeptide=Potri.001G440700.1.p locus=Potri.001G440700 ID=Potri.001G440700.1.v4.1 annot-version=v4.1 MTSLSFFPMLSFLFFLIFSFSWVTSAHTHESFLQCLDSQNSHSISKLIYTPINSSYSSILQFSIQNLRFNTSSTPKPLVIVTPTNISHIQAAIICSQKHG MQIRIRSGGHDYEGLSYVSTFSFVVIDLINLRTINVNAENKTAWVQSGVTIGEVYYRIAEKSRTLAFPASVCPTVGVGGHFSGGGYGMLMRKYGLAADHI IDAQLVDVKGRILDRESMGEDLFWAIRGGGGNTFGVVIAWKISLVSAPPTVTVFNVQRTLEQNASKLVHRWQFVADKLHEDLFIRIILNRVNSTEEGKSN TTIQASFNSLFLGGIDRLLPLIQDSFPELGLVKEDCIEMSWIQSVLYFDGFPSNSSLDVLLDRTPSTRRNFKAKSDYVKEPIPELGLEGIWERFFDKDIN TPILIFSPYGGKMSEISESSIPFPHRAGNIYKIQHLIYWDEEGIVATKRHISWIRRLYSYLAPYVSKTPRAAYVNYRDLDIGINNHAGNTSYRQASIWGL KYFKNNFDRLVRVKTAVDPANFFRNEQSIPPLSSW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20820			FAD-binding Berberine family p...		Potri.001G440700 [exp]	0	1
AT5G62380	NAC	ANAC101, VND6	VASCULAR-RELATED NAC-DOMAIN 6,...		Potri.014G163600 [exp]	3.46	0.6431
AT1G40390			DNAse I-like superfamily prote...		Potri.019G047420 [exp]	10.90	0.5519
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Potri.008G077700 [exp]	15.42	0.6201	Pt-PNFT3.4
AT2G26450			Plant invertase/pectin methyle...		Potri.018G051200 [exp]	17.88	0.6075
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Potri.009G083500 [exp]	28.46	0.5242
AT5G44265			Bifunctional inhibitor/lipid-t...		Potri.007G138400 [exp]	28.58	0.5498
AT5G10820			Major facilitator superfamily ...		Potri.018G017400 [exp]	34.48	0.5195
AT5G27470			seryl-tRNA synthetase / serine...		Potri.007G070501 [exp]	55.27	0.4887
					Potri.001G217950 [exp]	57.68	0.5254
AT1G03390			HXXXD-type acyl-transferase fa...		Potri.006G158400 [exp]	66.09	0.4436

Compare expression of checked genes

Potri.001G440700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.