Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20400 732 / 0 PKDM7B, JMJ14 JUMONJI 14 (.1.2) AT1G30810 732 / 0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT2G34880 654 / 0 PKDM7C, MEE27 maternal effect embryo arrest 27, Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT1G08620 636 / 0 PKDM7D Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT2G38950 430 / 2e-136 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT1G63490 296 / 9e-84 transcription factor jumonji (jmjC) domain-containing protein (.1) AT5G46910 172 / 5e-44 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT5G04240 162 / 5e-40 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) AT3G48430 153 / 2e-37 JUMONJI JMJ12, REF6 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G155100 [exp] 1183 / 0 AT4G20400 707 / 0.0 JUMONJI 14 (.1.2) Potri.013G046700 [exp] 651 / 0 AT1G08620 1281 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.019G018700 [exp] 638 / 0 AT1G08620 1260 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.002G037300 [exp] 541 / 7e-178 AT1G08620 669 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.003G126600 [exp] 320 / 3e-90 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.003G096100 [exp] 173 / 4e-44 AT5G46910 924 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.001G137700 [exp] 173 / 4e-44 AT5G46910 893 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.015G089000 [exp] 165 / 5e-41 AT3G48430 807 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.012G092400 [exp] 165 / 6e-41 AT3G48430 803 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008063 [exp] 822 / 0 AT1G30810 901 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10022024 [exp] 641 / 0 AT3G04490 1370 / 0.0 unknown protein Lus10042566 [exp] 639 / 0 AT3G04490 1382 / 0.0 unknown protein Lus10033903 [exp] 460 / 2e-147 AT1G08620 572 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10003548 [exp] 363 / 1e-108 AT1G08620 455 / 4e-142 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10008495 [exp] 321 / 1e-90 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10008531 [exp] 229 / 8e-61 AT1G63490 796 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10030988 [exp] 174 / 2e-44 AT5G46910 850 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10035385 [exp] 173 / 4e-44 AT5G46910 843 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10037989 [exp] 155 / 5e-38 AT5G04240 988 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF02373 [poplar] [flax] JmjC JmjC domain, hydroxylase CL0029 [poplar] [flax] Cupin PF02375 [poplar] [flax] JmjN jmjN domain CL0029 [poplar] [flax] PF02928 [poplar] [flax] zf-C5HC2 C5HC2 zinc finger CL0029 [poplar] [flax] PF05964 [poplar] [flax] FYRN F/Y-rich N-terminus CL0029 [poplar] [flax] PF05965 [poplar] [flax] FYRC F/Y rich C-terminus
Representative CDS sequence Show only first row Show all	>Potri.001G440900.1 pacid=42790848 polypeptide=Potri.001G440900.1.p locus=Potri.001G440900 ID=Potri.001G440900.1.v4.1 annot-version=v4.1 ATGGAACAGTTCAAATCTCCTGCATATTCTCATGTCAAAGAGGATCATTCTATTAAGCAATCTTGGAGAAGTGACAATACCCCTAAGGGCCCAAGAAGTC CCCAAAATCAAAAGGTAACAGCCAGATGGGATCCAGTCGAAGCTTGTAGGCCTCTCATTGATGATGCTCCAGTGTTTTATCCAACTGTTGAGGAATTTGA AGATACACTTGGTTATATATCAAAGATCCGTGCGAAAGCAGAGTTGTATGGTATATGCCGGATTGTCCCTCCACCTTCTTGGAGTCCACCTTGCCGCCTC AAAGAGAAAGATATATGGGAACATGCTAAATTTTCTACAAGAATTCAGTATGTTGAGTTGCTTCAAAATAGGGAGCCAATGAGAAAAAAATCTAAAAGTC GGAAACGGAAAAGGAGATTTTCGAGGATGGGAACAACGAGGAGACGCAAGAGGAGACTTACCAATTCTAGTTCAGAAGGAAATGTTGCCTCTGAGACTGA TGAGACATTTGGATTCCACTCTGGTTCTGATTTCACACTTGAAGAGTTTGAGAAAGAAGCTGCTTATTTCAAAGAGTGCTACTTTGGAACGAAGGATCTA ATGGATGATGGGAATGAAACCCAAAAATGGGAGCCTTCTGTCGAGGATATTGAAGGTGAATACTGGCGGATTGTTGAAAAACCAACTGACGAGGTTAAGG TACTCTATGGAGCTGATTTGGAAACAGCAACATTTGGAAGTGGGTTCCCTAAGGCTTCAGCCTTGATGACTGAAGGTGATTCAGATCAGTATGTGGTATC TGGGTGGAATCTAAACAACTTACCACGCCTGCCAGGTTCTGTGCTGTGTTTTGAAGGATGTGATATCTCAGGAGTTTTAGTTCCATGGCTGTATGTTGGA ATGTGTTTCTCATCATTTTGTTGGCATGTTGAGGACCACCACTTATATTCGCTAAACTATTTACATTGGGGTGATCCAAAGATATGGTACGGAGTACCTG AAAGCCATGCTTCCAATTTGGAGGATGCAATGAGAAAACATTTACCTGATTTGTTCGAAGAACAGCCTGATCTACTTCATGGACTGGTAACTCAACTATC TCCTTCAGTTTTAAAAGCTGAGGGTGTACCAGTTTATCGGGTGGTCCAACACTCTGGGGAGTTTGTTCTAACCTTTCCTAGAGCATACCACTCTGGCTTT AATTGTGGCTTCAACTGTGCAGAGGCAGTGAATGTAGCCCCTGTTGATTGGTTAGCACATGGACAGCATGCAGTTGAGCTTTACAGTGAGCAACGGCGCA AAACATCTATATCCCATGACAAGCTACTGATGGGAGCAGCTCAGGAAGCAAACCATGCCCTTAGGGAGCTATTACTTCTTGGAAAGGAAACTCCTGAAAA TTTAAGGTGGATGAGTGTCTGTGGGAAGGATGGAGTGCTTACTGCAGCAGTTAAGACAAGGGTAAAGATGGAGGAGGAAAGAATAAAGAGCCTTCCGACT AATTTAAAACTGCAAAAGATGGAAAAGGACTTTGATTTGCAAAAAGAGAGAGAATGTTTCTCATGCTTCTATGACTTGCATTTATCCTCTGCCAGCTGTA AGTGCTCCCCTGAACGATTTGCATGCCTTCAACACGCAAGCCATTTTTGTTCATGTGAAATAGACCACAGATATGTCCTTCTCCGCTACACTATGGATGA ATTGAACACTCTGGTTGATGGGCTGGAGGGAGAATCATATGGTCTGAAAGACTGCCCTGATGAACAGGGATTAGTTTCTCTTGGTGATAATGGCACTCGT GTTCCTGAGCTGGAACTTAAGGGTGAGGAATTCCAAACCAACTATTCTAAGAGGAAGGAAAGTCCACGTTGTTCTAAAAAAACAGAAGAAAAATTGAGCA CCAAAGGCTCTTGCAGTTTTAATAGCAATACTTCTTCAGAAGTAATCCAGTCAGAGAGTTATCACAACAGCTTTCCAGTAATGAAAAACAAAGATAAGGT GAAGCAAGAGGGATGCATTGATTTGAATATTGATGTTATGTCTATTGATCAGGAAAGTAAGCATCTGCTTGAATCTGATGGCTGTGATAACAAAGCAATC TCATATGTGAAGGAGACACATGGTTCACCATGTATGCAAGAGACGCCTGGCAGTTCAGATGCGGCAAAAGAACAAGACAGGGAACAAGCTGTTGGAGATT GTGAAGCTAAGTTACAGGAATTGTCAAATAAAAATGACCCTTCTTATCCAATGTTTACTCAAGATACTTGTGCATCTCGTAATAAGTTGTTTGGGGTTGA TCTTTCACGTTCACATTCAGTGAGGCCAGCAAAGAGCTTCAAAACTGAAATGAATAAGGGTGGCTTAGATGTAAGACCTGCAACTAATGGCAGTTCAGAT GCGGCAAAAGAACAAGACAGGGAACAAGCTGTTGGAGATTGTGAAGCTAAGTTACAGGAATTGTCAAATAAAAATGACCCTTCTTATCCCATGTTTACTC AGGACACTTGTGCATCTCGTAATAAGTTGTTTGGGGTTGATCTTTCACGTTCACATGCAGTGAGGCCAGCAAAGAGCTTCAAAACTGAAATGAATAAGGG TGGCTTAGATGTAAGACCTGCAACTAATCAAAGCATTCCAGTAAAGAAATTGAATCCTTGTGTAGAACCAATAAATGTAGGATCCGTCATGTTTGGAAAG TTTTGGTGCTGTAAGCAGGCCATTTTCCCTAAAGGATTTAAAAGCCGGGTTAAGTTCTTTAATGTGCATGATCCCATAAAAAAATGTTCCTATATTTCAG AAGTACGGGATGCTGGGCCTCTTGGCCCTCTTTTCAAGGTATCTTTAGAAAAATTCCCGGGTGAGACATTAGCAGCAGATGTTTCAATTCAGAAGTGCTG GGAGATGGTGGTGCAAAGACTAAATGATGAAATTGGAAGACGAAACAGCCTAGGAGAAAGAAACCTTCCCCCTTCGCAGAGTATTAATGGGATTGAAATG TTTGGATTCCTCTCCCCACCAATTGTTCAGGCTATCGAGGCTCTTGACCCTGATCATCGTTGCGTGGAATACTGGAATCACAGGCTTGTTAATTTGAGGA ATACAAGGGAAGCCAAGCAGCCCCCGTTTGGATCAAGTTGCTGTCTCACAAAAATGAAGGAAAAAATTGACATTAACCTTTTGACACAGGAACCTGGTAG CTTATTCATAGGAGGTCATCGCTCAGTTGACGAAGATGTGCAGCACGTGCTGCGAGGCTTATTCAAGAAAGCTAGTCAGGAAGAGTTGAAAACAATGCAC AGAATACTCCACAGTGACGCACAAAGTGCTGAGCGAAGAGAAGCTTTCACAACACTGATGGAGGAGATTCAGAAAACAAGTAGATAA
AA sequence Show only first row Show all	>Potri.001G440900.1 pacid=42790848 polypeptide=Potri.001G440900.1.p locus=Potri.001G440900 ID=Potri.001G440900.1.v4.1 annot-version=v4.1 MEQFKSPAYSHVKEDHSIKQSWRSDNTPKGPRSPQNQKVTARWDPVEACRPLIDDAPVFYPTVEEFEDTLGYISKIRAKAELYGICRIVPPPSWSPPCRL KEKDIWEHAKFSTRIQYVELLQNREPMRKKSKSRKRKRRFSRMGTTRRRKRRLTNSSSEGNVASETDETFGFHSGSDFTLEEFEKEAAYFKECYFGTKDL MDDGNETQKWEPSVEDIEGEYWRIVEKPTDEVKVLYGADLETATFGSGFPKASALMTEGDSDQYVVSGWNLNNLPRLPGSVLCFEGCDISGVLVPWLYVG MCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPESHASNLEDAMRKHLPDLFEEQPDLLHGLVTQLSPSVLKAEGVPVYRVVQHSGEFVLTFPRAYHSGF NCGFNCAEAVNVAPVDWLAHGQHAVELYSEQRRKTSISHDKLLMGAAQEANHALRELLLLGKETPENLRWMSVCGKDGVLTAAVKTRVKMEEERIKSLPT NLKLQKMEKDFDLQKERECFSCFYDLHLSSASCKCSPERFACLQHASHFCSCEIDHRYVLLRYTMDELNTLVDGLEGESYGLKDCPDEQGLVSLGDNGTR VPELELKGEEFQTNYSKRKESPRCSKKTEEKLSTKGSCSFNSNTSSEVIQSESYHNSFPVMKNKDKVKQEGCIDLNIDVMSIDQESKHLLESDGCDNKAI SYVKETHGSPCMQETPGSSDAAKEQDREQAVGDCEAKLQELSNKNDPSYPMFTQDTCASRNKLFGVDLSRSHSVRPAKSFKTEMNKGGLDVRPATNGSSD AAKEQDREQAVGDCEAKLQELSNKNDPSYPMFTQDTCASRNKLFGVDLSRSHAVRPAKSFKTEMNKGGLDVRPATNQSIPVKKLNPCVEPINVGSVMFGK FWCCKQAIFPKGFKSRVKFFNVHDPIKKCSYISEVRDAGPLGPLFKVSLEKFPGETLAADVSIQKCWEMVVQRLNDEIGRRNSLGERNLPPSQSINGIEM FGFLSPPIVQAIEALDPDHRCVEYWNHRLVNLRNTREAKQPPFGSSCCLTKMKEKIDINLLTQEPGSLFIGGHRSVDEDVQHVLRGLFKKASQEELKTMH RILHSDAQSAERREAFTTLMEEIQKTSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20400		PKDM7B, JMJ14	JUMONJI 14 (.1.2)		Potri.001G440900 [exp]	0	1
AT4G32750			unknown protein		Potri.006G241200 [exp]	4.24	0.7784
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.004G184500 [exp]	10.48	0.6846
AT5G19400		SMG7	Telomerase activating protein ...		Potri.006G038500 [exp]	12.96	0.7484
AT4G10925			Nuclear transport factor 2 (NT...		Potri.001G089600 [exp]	18.46	0.6844
AT5G23710			DNA binding;DNA-directed RNA p...		Potri.003G221301 [exp]	21.49	0.6532
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Potri.017G027800 [exp]	23.06	0.7030
AT2G01900			DNAse I-like superfamily prote...		Potri.016G101966 [exp]	24.00	0.7104
AT5G01990			Auxin efflux carrier family pr...		Potri.016G141700 [exp]	27.82	0.6913
AT5G08240			unknown protein		Potri.001G408900 [exp]	31.40	0.6280
					Potri.011G118166 [exp]	31.74	0.7211

Compare expression of checked genes

Potri.001G440900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.