Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03230 322 / 1e-97 S-locus lectin protein kinase family protein (.1) AT4G21390 312 / 3e-95 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 307 / 3e-93 S-locus lectin protein kinase family protein (.1.2) AT1G61610 303 / 1e-91 S-locus lectin protein kinase family protein (.1) AT4G23180 297 / 3e-91 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23230 285 / 3e-88 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT3G16030 292 / 1e-87 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT1G11350 291 / 2e-87 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G11340 290 / 3e-86 S-locus lectin protein kinase family protein (.1) AT1G11410 288 / 3e-86 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G437950 [exp] 511 / 6e-178 AT4G21390 406 / 5e-135 S-locus lectin protein kinase family protein (.1) Potri.001G441400 [exp] 516 / 4e-174 AT3G16030 523 / 1e-174 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.001G442200 [exp] 435 / 2e-142 AT3G16030 528 / 5e-176 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.011G037600 [exp] 346 / 5e-108 AT4G21390 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G441801 [exp] 327 / 6e-108 AT4G21390 301 / 1e-96 S-locus lectin protein kinase family protein (.1) Potri.011G037300 [exp] 341 / 6e-106 AT4G21390 922 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027900 [exp] 339 / 2e-105 AT4G21390 915 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027800 [exp] 338 / 5e-105 AT4G21390 941 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 328 / 4e-101 AT4G21380 711 / 0.0 receptor kinase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023391 [exp] 395 / 3e-123 AT1G11300 520 / 5e-168 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10038411 [exp] 338 / 2e-111 AT1G11330 308 / 1e-98 S-locus lectin protein kinase family protein (.1.2) Lus10025774 [exp] 328 / 7e-102 AT3G16030 390 / 2e-123 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Lus10018408 [exp] 318 / 1e-96 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020083 [exp] 299 / 5e-95 AT4G21390 427 / 6e-143 S-locus lectin protein kinase family protein (.1) Lus10007600 [exp] 320 / 2e-94 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10014812 [exp] 311 / 2e-94 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006742 [exp] 315 / 4e-94 AT4G21390 800 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10024064 [exp] 305 / 2e-92 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033752 [exp] 291 / 2e-92 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.001G441040.1 pacid=42791139 polypeptide=Potri.001G441040.1.p locus=Potri.001G441040 ID=Potri.001G441040.1.v4.1 annot-version=v4.1 ATGCTTCTTTGTTTTTGCTTCCTTGTTCATGAATGTTACCTTCCATGGCTAGCAGGATCAACCGATTCTATTTGCTCACTGTACCAAGGTGGCGATTCCC TCAATTCTTCCACCACTCTAGTTTCCAAAAATGGGCTATTCACTTTAGGATTCACTAGACTTGGCTCTGCCGAGTCGAATGTTAGCTACTTGGGAATATG GTACACCAATGACATGAGCCACCCTTTTTGGCTTGCCAACAGAGACAAATCCATAGCAGACAATTCAGGGGTTCTTGGAATAGATGGATCAGGAAATATG AAACTCACCTACTCTGGTGGTGATCTTGTTGATTTTTACTCGAGTCGATCCTCCACCACCAATTTAACAGCTGTTTTAGAAGACTCGGGCAATGTTGTTC TGAAAGATGCAAATTCGAATCAGATTTTATGGCAAAGCTTTGATCATCCTACTGACAAAACAAAAATGAGATATGGAATGCGCCTTGGTAAAGAAATCTG CAATCTGCAAGGAAGAATGAACAAAAGGCAAAGTAATGGTGTCATGCTTGAGATGATGACGAGTAAGATGACAATCGATCTCAATGTATTTAGTTCGCTC ATGAAAAACCGAGTTGTGAGCAATCTGAATAGAACTCTGGTTGTCACAATACATAGGAATAAATATTACTTAACAGTATTCTTGCTAGGAATGAAGTTAG GGATCAATCGTAGGACTGGCCAATCCTGGTACCTTACGTCCTGGTTGAGTAACATGGTGCCAGCTTCGGGTGCTTTTACGTTTGAGTGGGAGCCCAATGG ACAGCAACTGGTTATTGAGCTGCGAGGCGAGCTTTTTTGGACTAGTGGATCATTGAGGAGACTTGTCTACAGTTTTCTTAATGTTTCTAAAGCTGACGAG GATTACTTTACGTTCACGGCTGACAAATTAGATATATTCAGCACCCAGGAGGATGAGATGATATTTTCAAGATGGAACTTGAGCTCTGATGGGGGCATAA TAGGGAATATAATGGAGGCTTATTTGGAGGCGCAGCCTTTTCTACATGACTTGATGACCATGGATACAACAAATGACATATATGAACTTGAGAATGATGG AAACAAAGGTCACAATTTAAAAGTATATAGTGCTGCAAAGATCATGGCTTCGACAAGTAATTTTGCATCAGAAAATAAACTCGGACAGGGTGGTTTTGGA CTTGTTTACAAGGGAAAATTGCCAGAGGGGCGAGAGATAGCTGTAAAAAGACTGTCTAGAAGTTCAGGACAAGGGCTGGTGGAATTCAAAAACGAGCTTA TACTCATAGCTAAATTGCAACACATGAATCTTGTCAGGCTCCTAGGTTGCTGCATTCAAGGGGAAGAGAAAATGCTAGTGTACGTATACATGCCTAATAA AAGCTTAAATTTATTTATATTTGTACTCAGATCGAGGATAATTCATAGAGATTTGAAGGCTGGCAACATACTACTTGATGAAAATCTGAACCCCAAAATT TCTGATTTTGGCATGGCAAGAATTTTCAAGATTAATGATTTACAAGCAAATACAAACCAAATTGTTGGAACACGTGGATATATGTCCCCTGAATATGTCA TGGAGGGCATCTTCTCTGTGTATAATGTCTTCAGTTTTGGAGTTCTGCTGGAAATTGTGAGTGGTAGAAGGATCCAAGGCCTCCTTGAAATAGACGGTCA CCCCCTTATACTTGCATGGGAGCTATGGAAAGCAGGTACCTCATTTGAGATGATGGATCCAATACTAAGAGAATCTTGCTTTAAGGACCAAGTCTTGAGA TGCATTAACGTTGGCTTGCTATGCGTGGAAGACACCGCCATAGATAGGCCAACCATGTCAGATGTTGTATCGATGTTAACAAGTGAAGCACAGTTACCGT TGCCCAAACAGCGTGCGTTTTCAAATCCAAGAACTGCCATAGACGACGCAGCAATGAGTTTAAGGAATCCAGAAAGTAGTTCCAGGAATTACTTATCCAC TTCAATTATGTATGGACGATAG
AA sequence Show only first row Show all	>Potri.001G441040.1 pacid=42791139 polypeptide=Potri.001G441040.1.p locus=Potri.001G441040 ID=Potri.001G441040.1.v4.1 annot-version=v4.1 MLLCFCFLVHECYLPWLAGSTDSICSLYQGGDSLNSSTTLVSKNGLFTLGFTRLGSAESNVSYLGIWYTNDMSHPFWLANRDKSIADNSGVLGIDGSGNM KLTYSGGDLVDFYSSRSSTTNLTAVLEDSGNVVLKDANSNQILWQSFDHPTDKTKMRYGMRLGKEICNLQGRMNKRQSNGVMLEMMTSKMTIDLNVFSSL MKNRVVSNLNRTLVVTIHRNKYYLTVFLLGMKLGINRRTGQSWYLTSWLSNMVPASGAFTFEWEPNGQQLVIELRGELFWTSGSLRRLVYSFLNVSKADE DYFTFTADKLDIFSTQEDEMIFSRWNLSSDGGIIGNIMEAYLEAQPFLHDLMTMDTTNDIYELENDGNKGHNLKVYSAAKIMASTSNFASENKLGQGGFG LVYKGKLPEGREIAVKRLSRSSGQGLVEFKNELILIAKLQHMNLVRLLGCCIQGEEKMLVYVYMPNKSLNLFIFVLRSRIIHRDLKAGNILLDENLNPKI SDFGMARIFKINDLQANTNQIVGTRGYMSPEYVMEGIFSVYNVFSFGVLLEIVSGRRIQGLLEIDGHPLILAWELWKAGTSFEMMDPILRESCFKDQVLR CINVGLLCVEDTAIDRPTMSDVVSMLTSEAQLPLPKQRAFSNPRTAIDDAAMSLRNPESSSRNYLSTSIMYGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03230			S-locus lectin protein kinase ...		Potri.001G441040 [exp]	0	1
AT1G77930			Chaperone DnaJ-domain superfam...		Potri.002G090600 [exp]	1.41	0.9539
AT4G37340		CYP81D3	"cytochrome P450, family 81, s...		Potri.002G121200 [exp]	5.29	0.9476	Pt-IFS1.43
AT1G19260			TTF-type zinc finger protein w...		Potri.014G176150 [exp]	7.14	0.9372
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Potri.010G228600 [exp]	7.93	0.9305
AT1G05675			UDP-Glycosyltransferase superf...		Potri.017G032300 [exp]	8.94	0.9367
AT1G13680			PLC-like phosphodiesterases su...		Potri.011G144900 [exp]	12.44	0.9328
AT5G26940		DPD1	defective in pollen organelle ...		Potri.005G020600 [exp]	12.96	0.9190
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.003G119600 [exp]	13.26	0.9233
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Potri.013G148400 [exp]	14.28	0.9166
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.006G022500 [exp]	15.81	0.9223

Compare expression of checked genes

Potri.001G441040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.