Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16030 273 / 6e-82 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT1G67520 264 / 7e-81 lectin protein kinase family protein (.1) AT1G11340 249 / 1e-72 S-locus lectin protein kinase family protein (.1) AT4G21390 247 / 3e-72 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 236 / 3e-68 S-locus lectin protein kinase family protein (.1.2) AT1G61610 235 / 8e-68 S-locus lectin protein kinase family protein (.1) AT1G11410 234 / 9e-68 S-locus lectin protein kinase family protein (.1) AT1G11300 230 / 8e-65 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT4G27290 224 / 2e-64 S-locus lectin protein kinase family protein (.1) AT1G61370 220 / 1e-62 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G441400 [exp] 887 / 0 AT3G16030 523 / 1e-174 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.001G442200 [exp] 651 / 0 AT3G16030 528 / 5e-176 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.001G437875 [exp] 485 / 2e-169 AT5G18470 157 / 5e-44 Curculin-like (mannose-binding) lectin family protein (.1) Potri.001G411100 [exp] 261 / 8e-78 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411400 [exp] 260 / 2e-77 AT4G27290 770 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G129300 [exp] 258 / 2e-77 AT4G21380 599 / 0.0 receptor kinase 3 (.1) Potri.001G411300 [exp] 259 / 4e-77 AT4G27290 759 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 260 / 5e-77 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G039200 [exp] 259 / 8e-77 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023391 [exp] 492 / 2e-161 AT1G11300 520 / 5e-168 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10014812 [exp] 271 / 4e-81 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016859 [exp] 253 / 1e-75 AT4G27290 626 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006746 [exp] 254 / 1e-74 AT1G11340 836 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 251 / 6e-74 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10020052 [exp] 251 / 7e-74 AT1G11340 858 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10009582 [exp] 244 / 6e-72 AT3G16030 498 / 3e-165 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Lus10037865 [exp] 244 / 4e-71 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 244 / 4e-71 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 244 / 4e-71 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.001G441180.2 pacid=42792734 polypeptide=Potri.001G441180.2.p locus=Potri.001G441180 ID=Potri.001G441180.2.v4.1 annot-version=v4.1 ATGTTACCTTGCATGGCTAGCTGGATCTACCGGTTCCTTCTGTTCTGCTTCTGTGCCTCTCACGCTTTGGCAGCAGACACACTGTACCAAGGTGATGATT CCCTCAGTTCTCCCAATACTCTAGTTTCCAAAAATGGGCTCTTCACTTTAGGATTCACAGGACTCGGCTCTGCCGAGTCGAATGCTAGCTACTTGGGAAT ATGGTACAACAATGACACAAGCCACCCTTTTTGGCTAGCCAACAGAGGCAAACCCATAGCAGACAATTCAGGGGTTCTTGCAATAGATGGATCAGGAAAT ATGAAACTCACCTACTCTGGAGGTGATCCTGTTGAGTTCTATTCAAGTCAATCTTCTACAACCAATATAACAGCTATTTTAGAAGATTCAGGCAATTTTG TTCTCAAAGATGAAAATTCTGGCAGCCAACAGGTCTTATGGCAAAGCTTTGACTCTCCTACTGACACATTCTTGCCTGGAATGAAGTTAGGGATCAACCA TAGAACTGGCCAAAACTGGTCCCTCTTGTCGTGGTTGAGCGACTTAGTACCCACCCCCGCTGGTGCTTTCACTTTTGAATGGGATACTAATGGAAAGAAG TTGGTCATTAAGCGGCGCGGTGTATTTTATTGGACTAGTGGACCATTGAGGAGCAATACTAGTTTCGAAAACTTTTATCTGAATTCAGGGAAAGAAGTTG ATTTCAGTTTTATTAATGATTCTAACGCAGACGAGGATTACTTTATGTTCAAAGTTTCTGCAAATGAATATGCTTCTCGGGATCAAAGGAATTTTTCAAT GTGGCAGTTGAGATCTGATGGGAGCATAGTAGATCTAACTACTAGTCAAGCATTTGGGGGCCCAATATGTAAAGGAAATAACGCAGATGCTGGTTGCGAG AGGTGGTCAGGACCGACATGCAGGAGCAATTGGAACAGTTTTGAATTGAGATCAGGTTACTTTTTTGAAACAGTTCCTAGGAAGGTCGACTATAATTCTA GTCTTAGCACTAGTGATTGCAAGGACATCTGCTGGAAAAATTGTACATGTGTTGGTGTTACTCCCATAGCCAATAATGCCAACAATACTGGATGCGTGTT TTGGTATGGAAGCTTTACACAAGGCCTGACTGGAAATAACATTCAACACTACATCATTGTTGATCAAGGCTCTTCAGGGAAAATGAATTGGATATGGATT ATTTTAGCTTCCGTGGGAGTTGTTTCATTGACGGGGCTCGCGGGACTCTTGTTGTATCGGAGAAGGAGAAGACATGGAGAGAAGTACCTATTTGAGTTGC TGACAATGGATGCAACGAACGACACGCTTGAACTCGAAAATGACGGAAACAAGGGCCATAATTTGAAGGTATTCAGTGCTGCAACAATCATGGCTGCTAC AAATTCCTTTTCTGCAGAGAATAAGCTTGGACAAGGTGGTTTTGGACCAGTTTACAAGGGGACATTGCCGGATGGGCGAGAGATAGCTGTAAAAAGACTG TCAAAAAGTTCAGGACAAGGGCTGGTGGAATTCAAAAACGAGCTTATACTCATAGCTAAATTGCAACACATGAATCTTGTCAGACTCGTAGGATGCTGCA TTCAAGGGGAAGAGAAAATGTTAGTGTACGAATACATGCCTAATAAAAGCTTAGATTCATTTATATTCGATGAATAA
AA sequence Show only first row Show all	>Potri.001G441180.2 pacid=42792734 polypeptide=Potri.001G441180.2.p locus=Potri.001G441180 ID=Potri.001G441180.2.v4.1 annot-version=v4.1 MLPCMASWIYRFLLFCFCASHALAADTLYQGDDSLSSPNTLVSKNGLFTLGFTGLGSAESNASYLGIWYNNDTSHPFWLANRGKPIADNSGVLAIDGSGN MKLTYSGGDPVEFYSSQSSTTNITAILEDSGNFVLKDENSGSQQVLWQSFDSPTDTFLPGMKLGINHRTGQNWSLLSWLSDLVPTPAGAFTFEWDTNGKK LVIKRRGVFYWTSGPLRSNTSFENFYLNSGKEVDFSFINDSNADEDYFMFKVSANEYASRDQRNFSMWQLRSDGSIVDLTTSQAFGGPICKGNNADAGCE RWSGPTCRSNWNSFELRSGYFFETVPRKVDYNSSLSTSDCKDICWKNCTCVGVTPIANNANNTGCVFWYGSFTQGLTGNNIQHYIIVDQGSSGKMNWIWI ILASVGVVSLTGLAGLLLYRRRRRHGEKYLFELLTMDATNDTLELENDGNKGHNLKVFSAATIMAATNSFSAENKLGQGGFGPVYKGTLPDGREIAVKRL SKSSGQGLVEFKNELILIAKLQHMNLVRLVGCCIQGEEKMLVYEYMPNKSLDSFIFDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.001G441180 [exp]	0	1
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Potri.010G071500 [exp]	3.00	0.7623
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.013G156000 [exp]	7.74	0.6924
AT1G12710		ATPP2-A12	phloem protein 2-A12 (.1)		Potri.003G121900 [exp]	8.71	0.7244
AT5G64170			dentin sialophosphoprotein-rel...		Potri.001G205800 [exp]	10.58	0.7060
AT2G18600			Ubiquitin-conjugating enzyme f...		Potri.014G041466 [exp]	18.33	0.6874
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Potri.002G106900 [exp]	39.23	0.6962
AT1G04500			CCT motif family protein (.1)		Potri.010G066100 [exp]	42.33	0.6203
AT4G16146			cAMP-regulated phosphoprotein ...		Potri.010G141300 [exp]	44.27	0.6227
AT3G14720		ATMPK19	ARABIDOPSIS THALIANA MAP KINAS...		Potri.001G381300 [exp]	47.41	0.5900	Pt-TDY1.2
AT2G30330		BLOS1	BLOC subunit 1, GCN5L1 family ...		Potri.013G156700 [exp]	51.70	0.6226

Compare expression of checked genes

Potri.001G441180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.