Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16030 523 / 1e-174 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT4G21390 506 / 9e-168 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 505 / 2e-167 S-locus lectin protein kinase family protein (.1.2) AT1G11350 491 / 3e-162 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G11340 490 / 5e-161 S-locus lectin protein kinase family protein (.1) AT1G61610 482 / 1e-158 S-locus lectin protein kinase family protein (.1) AT1G65790 478 / 6e-157 ARK1 receptor kinase 1 (.1) AT1G11300 489 / 4e-154 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT4G21380 469 / 1e-153 ARK3 receptor kinase 3 (.1) AT1G11410 464 / 8e-152 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G442200 [exp] 1060 / 0 AT3G16030 528 / 5e-176 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.001G441180 [exp] 923 / 0 AT3G16030 274 / 3e-82 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.001G437950 [exp] 697 / 0 AT4G21390 406 / 5e-135 S-locus lectin protein kinase family protein (.1) Potri.001G437875 [exp] 569 / 0 AT5G18470 157 / 5e-44 Curculin-like (mannose-binding) lectin family protein (.1) Potri.011G035600 [exp] 543 / 0 AT4G21380 711 / 0.0 receptor kinase 3 (.1) Potri.011G037300 [exp] 533 / 2e-178 AT4G21390 922 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037600 [exp] 530 / 2e-177 AT4G21390 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 528 / 1e-176 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G039200 [exp] 526 / 7e-176 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023391 [exp] 863 / 0 AT1G11300 520 / 5e-168 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10014812 [exp] 547 / 0 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 509 / 3e-169 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 508 / 6e-169 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 496 / 5e-163 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 493 / 5e-163 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10007611 [exp] 491 / 2e-162 AT1G11340 751 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 491 / 3e-162 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10006746 [exp] 491 / 5e-162 AT1G11340 836 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 491 / 8e-162 AT4G21380 810 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G441400.3 pacid=42792450 polypeptide=Potri.001G441400.3.p locus=Potri.001G441400 ID=Potri.001G441400.3.v4.1 annot-version=v4.1 ATGTTATCTTCCATGGCTAGAAGGATCTACCGGTTCCTTTTGTTTTGCTTCTGTGCCTCTCACGTTTTGGCAGCAGACACACTGTACCAAGGTGGTGATT CCCTCAATTCTTCCAGTACTCTAGTTTCCAAAAATGGGCTCTTCACTTTAGGATTCACAAGACTCGGCTCTGCCGAGTCGAATGCTAGCTACTTGGGAAT ATGGTACAACAATGACACAAGCCACCCTTTTTGGCTAGCCAACAGAGACAAACCCATATCAGACACTTCAGGGGTTCTTGCAATAGATGGATCGGGAAAT ATGAAACTCATCTACTCTGGAGGTGATCCTGTTGAGTTCTATTCAAGTCAATCTTCTGCAACCAATATAACAGCTATTTTAGAAGATTCAGGCAATTTTG TTCTCAAAGATGAAAATTCTGGCAGCCAACAGGTCTTATGGCAAAGCTTTGACTTTCCTACTGACACATTCTTGCCTGGAATGAAGTTAGGGATCAACCA TAGAACTGGCCAAACCTGGTCCCTCATGTCGTGGTTGAGCGACTTAGCACCCACTCCCGCTGGTGCTTTCACTTTTGAATGGGATACTAATGGAAAGGAG TTGGTCATTAAGCGGCGAGATGTAATTTATTGGACTACTGGACCATTGAGGAGCAATACTAGTTTCGAAATTCCTTTTCTGGATGCAGCGGTTCTTGATT TCAGTTTTATTAATGATTCTAACGCAGACGAGGATTACTTTATGTTCACAGTTTCTGCAAATCAATTTACTCCTCAGGGTCAAAGGAATTTTTCAATGTG GCAGTTGGAATATGATGGGAGCATAGTAGATAACACTACTAGTCGAACATATGGGGGATCAACATGTAAAGGAAATAACACAGATGGTGGTTGCGAGAGG TGGTCAGGACCGGCATGCAGGAGCAATAGGAACAGTTTTGAACTGAGACGAGGATACTTTGTTAACACAGTTCCTATTAAGGTCGACGATAATTCTAGTC TTAGTATTAGTGATTGCATGGACATCTGCTGGAAAGATTGTCAATGTGTTGGTGTTCCTACCGTAGGCAATAATGCCAACGATACTGGATGCACGTTTTA TTATGGAAGCTTTACACAAGACCTGAGTGGAAATGCAATTCAATACCACATCATTGTTCAAGGCTCTACAGGGAAAAGGAATTGGATATGGATTATTTTA GCTTCTGTGGGATTTGTTTCACTGATGGGGCTCGCGGGACTCTTGTGGTATCTGAGAAGGAGAAGACTTAGAGCAGAGAAGTATCTCAATGAGTTGCTGA CATTGGATTCAACGAACGATACGCTTGAACTCGAAAATGACGGAAACAAGGGCCATAATTTAAAGGTATATACTGCAGCAACAATTATGGCTGCTACAAA TTCCTTTTCTGCAGACAATAAACTTGGACAAGGTGGCTTTGGACCAGTTTACAAGGGGAAATTGCCGGATGGGCGAGAGATAGCGGTAAAAAGATTGTCT AGAAATTCAGGACAAGGACTGGTGGAATTCAAAAACGAGCTTATACTCATAGCTAAATTGCAACACATGAATCTTGTCAGGCTCCTAGGCTGCTGCATTC AAGGGGAAGAGAAAATGTTAGTGTACGAATACATGCCTAATAAAAGCTTGGATACATTTATATTTGATCAATCAAAAAGGGAGCTCATAGACTGGAAGAA GCGATTTGAAATCATTGAAGGGATAGCTCAAGGGCTCCTTTACCTTCATAAGTATTCAAGATTGAGGATAATTCACCGAGATTTGAAGGCTAGCAACATA CTACTTGATGAAAATCTGAACCCCAAAATTTCTGATTTTGGCATGGCAAGAATTTTCAAGATCAATGATTTAGAAGGAAATACAAACCAAATTGTTGGGA CGCGTGGATATATGTCCCCTGAGTATGTTATGGAGGGCATTTTCTCTGTGAAATCTGATGTCTTCAGTTTTGGAGTTCTACTACTGGAAATTGTGAGTGG TAGAAGGATCCAAGGCCTTCTTGAAATAGACGGCCGCCCTCTCAATCTTGTGGGATATGCATGGGAGCTATGGAAAGCAGGTAGCCCATTTGAGCTGGTG GATCCAATACTAAGAGAATCTTGCTCCAAAGACCAAGTCTTGAGATGCATTCATGTGGGCTTGCTATGTGTAGAAGACAATGCAGTGGATAGGCCGATTA TGTCAGATGTTATATCAATGCTAACAAGTGAAGCACAATTACCACTTCCCAAACAGCCTGCATTTTCCAGTGCAAGAAGTGTTATGGAAGGAAAGAGCTT CAGCAATCCTGCAGAGACTGGTTCCAAAAATTATGTTTCGGTGTCAACAATGGATGCGAGATAG
AA sequence Show only first row Show all	>Potri.001G441400.3 pacid=42792450 polypeptide=Potri.001G441400.3.p locus=Potri.001G441400 ID=Potri.001G441400.3.v4.1 annot-version=v4.1 MLSSMARRIYRFLLFCFCASHVLAADTLYQGGDSLNSSSTLVSKNGLFTLGFTRLGSAESNASYLGIWYNNDTSHPFWLANRDKPISDTSGVLAIDGSGN MKLIYSGGDPVEFYSSQSSATNITAILEDSGNFVLKDENSGSQQVLWQSFDFPTDTFLPGMKLGINHRTGQTWSLMSWLSDLAPTPAGAFTFEWDTNGKE LVIKRRDVIYWTTGPLRSNTSFEIPFLDAAVLDFSFINDSNADEDYFMFTVSANQFTPQGQRNFSMWQLEYDGSIVDNTTSRTYGGSTCKGNNTDGGCER WSGPACRSNRNSFELRRGYFVNTVPIKVDDNSSLSISDCMDICWKDCQCVGVPTVGNNANDTGCTFYYGSFTQDLSGNAIQYHIIVQGSTGKRNWIWIIL ASVGFVSLMGLAGLLWYLRRRRLRAEKYLNELLTLDSTNDTLELENDGNKGHNLKVYTAATIMAATNSFSADNKLGQGGFGPVYKGKLPDGREIAVKRLS RNSGQGLVEFKNELILIAKLQHMNLVRLLGCCIQGEEKMLVYEYMPNKSLDTFIFDQSKRELIDWKKRFEIIEGIAQGLLYLHKYSRLRIIHRDLKASNI LLDENLNPKISDFGMARIFKINDLEGNTNQIVGTRGYMSPEYVMEGIFSVKSDVFSFGVLLLEIVSGRRIQGLLEIDGRPLNLVGYAWELWKAGSPFELV DPILRESCSKDQVLRCIHVGLLCVEDNAVDRPIMSDVISMLTSEAQLPLPKQPAFSSARSVMEGKSFSNPAETGSKNYVSVSTMDAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.001G441400 [exp]	0	1
AT4G21920			unknown protein		Potri.004G015900 [exp]	2.00	0.9374
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.018G094900 [exp]	6.00	0.8621
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Potri.002G183200 [exp]	7.93	0.8948
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.008G069300 [exp]	8.24	0.8622
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Potri.016G097400 [exp]	13.11	0.8917	Pt-DOGT1.1
AT5G24430			Calcium-dependent protein kina...		Potri.012G023300 [exp]	13.26	0.8672	CRK4
AT5G49525			unknown protein		Potri.010G148300 [exp]	14.83	0.8388
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Potri.012G001400 [exp]	16.12	0.8527	NAC015
					Potri.001G290300 [exp]	16.97	0.8683
AT4G35160			O-methyltransferase family pro...		Potri.011G059600 [exp]	17.83	0.8749	FOMT8,OOMT2.20

Compare expression of checked genes

Potri.001G441400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.