Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21390 304 / 1e-97 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 295 / 2e-94 S-locus lectin protein kinase family protein (.1.2) AT1G11350 295 / 3e-94 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT4G23240 280 / 1e-93 CRK16 cysteine-rich RLK (RECEPTOR-like protein kinase) 16 (.1) AT4G23180 285 / 6e-92 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G11530 283 / 3e-91 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT1G65790 286 / 4e-91 ARK1 receptor kinase 1 (.1) AT4G23280 280 / 2e-90 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G23230 274 / 1e-89 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT3G45860 278 / 3e-89 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G437950 [exp] 488 / 1e-175 AT4G21390 406 / 5e-135 S-locus lectin protein kinase family protein (.1) Potri.001G441400 [exp] 486 / 6e-169 AT3G16030 523 / 1e-174 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.001G442200 [exp] 398 / 2e-134 AT3G16030 528 / 5e-176 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.001G441040 [exp] 326 / 7e-108 AT4G03230 322 / 1e-97 S-locus lectin protein kinase family protein (.1) Potri.011G037600 [exp] 318 / 2e-103 AT4G21390 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037300 [exp] 316 / 3e-102 AT4G21390 922 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 311 / 2e-100 AT4G21380 711 / 0.0 receptor kinase 3 (.1) Potri.004G027900 [exp] 310 / 4e-100 AT4G21390 915 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014802 [exp] 296 / 4e-98 AT1G11330 454 / 5e-152 S-locus lectin protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023391 [exp] 372 / 9e-121 AT1G11300 520 / 5e-168 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10007600 [exp] 316 / 1e-98 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10018408 [exp] 308 / 1e-98 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 299 / 6e-96 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 298 / 1e-95 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10003156 [exp] 297 / 8e-95 AT3G16030 556 / 0.0 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Lus10037732 [exp] 296 / 9e-95 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10016871 [exp] 295 / 4e-94 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007602 [exp] 293 / 6e-94 AT1G65800 788 / 0.0 receptor kinase 2 (.1) Lus10037731 [exp] 288 / 7e-94 AT4G27290 644 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G441801.1 pacid=42789879 polypeptide=Potri.001G441801.1.p locus=Potri.001G441801 ID=Potri.001G441801.1.v4.1 annot-version=v4.1 ATGTCATGTGCAAGTCGCATTCAAGGGGAAGAGAAAATGTTAGTGTACGAATACATGCCTAATAAAAGCTTGGATTCATTTATATTTGTTCAATCAAAAA GGGAGCTCATAGACTGGAAGAAGCGATTTGAAATCATTGAAGGGATAGCTCAAGGGCTACTTTACCTTCACAAGTACTCGAGATTGAGGATAATTCACCG AGATTTGAAGGCTGGGAACATACTACTTGATGAAAATCTGAACCCCAAAATTTCTGATTTTGGCATGGCAAGAATTTTCAAGATCAATGATTTAGAAGGA AATACAAATCAAATTGTTGGGACGCGTGGTTATATGTCCCCTGAGTATGTCATGGAGGGCATTTTCTCTGTGAAATCTGATGTGTTTAGTTTTGGAGTTC TACTGTTGGAAATTGTGAGTGGTAGAAGGATCCAAGGCCTCCTTGAAATAGACGGCAGCCCTCTTAATCTTGTGGGATATGCATGGGAGCTATGGAAAGC CGGTAGCCCATTTGAGCTGGTGGATCCAGTACTAAGAGAATCTTGCTCTAAAGACCAAGTCTTGAGATGCATTCATGTGGGCTTGCTATGTGTAGAAGAC AATGCAGTGGATAGGCCGATTATGTCAGATGTTATATTAATGCTAACAAGTGAAGCACAATTACGTCTTCCCAAACAGCCTGCATTTTCCAGTGCAAGAA GTATTGTGGAAGAAAAGAGCCTCAGCAAGCCAGCAGAGATTGATACTTCCATAAATTATGTATCTCTGTCAACCATGGATGCGAGATAG
AA sequence Show only first row Show all	>Potri.001G441801.1 pacid=42789879 polypeptide=Potri.001G441801.1.p locus=Potri.001G441801 ID=Potri.001G441801.1.v4.1 annot-version=v4.1 MSCASRIQGEEKMLVYEYMPNKSLDSFIFVQSKRELIDWKKRFEIIEGIAQGLLYLHKYSRLRIIHRDLKAGNILLDENLNPKISDFGMARIFKINDLEG NTNQIVGTRGYMSPEYVMEGIFSVKSDVFSFGVLLLEIVSGRRIQGLLEIDGSPLNLVGYAWELWKAGSPFELVDPVLRESCSKDQVLRCIHVGLLCVED NAVDRPIMSDVILMLTSEAQLRLPKQPAFSSARSIVEEKSLSKPAEIDTSINYVSLSTMDAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.001G441801 [exp]	0	1
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.017G051300 [exp]	1.00	0.8415
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.001G437950 [exp]	1.41	0.8355
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Potri.014G041532 [exp]	8.66	0.7370
AT5G05390		LAC12	laccase 12 (.1)		Potri.008G073800 [exp]	8.77	0.7618	LAC90b
AT2G26490			Transducin/WD40 repeat-like su...		Potri.002G130400 [exp]	11.22	0.7675
AT3G11310			unknown protein		Potri.014G056100 [exp]	12.24	0.7077
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.011G005601 [exp]	13.07	0.7639
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Potri.003G203600 [exp]	14.07	0.7230
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Potri.001G455000 [exp]	14.28	0.6779
AT4G18400			unknown protein		Potri.004G133260 [exp]	19.18	0.6482

Compare expression of checked genes

Potri.001G441801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.