Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16030 529 / 2e-176 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT4G21390 507 / 5e-168 B120 S-locus lectin protein kinase family protein (.1) AT4G21380 486 / 5e-160 ARK3 receptor kinase 3 (.1) AT1G65790 486 / 5e-160 ARK1 receptor kinase 1 (.1) AT1G11340 484 / 1e-158 S-locus lectin protein kinase family protein (.1) AT1G61610 478 / 8e-157 S-locus lectin protein kinase family protein (.1) AT1G65800 471 / 3e-154 ARK2 receptor kinase 2 (.1) AT1G11410 464 / 2e-151 S-locus lectin protein kinase family protein (.1) AT4G27290 461 / 8e-151 S-locus lectin protein kinase family protein (.1) AT4G11900 459 / 2e-149 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G441400 [exp] 1054 / 0 AT3G16030 523 / 1e-174 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.001G441180 [exp] 686 / 0 AT3G16030 274 / 3e-82 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.001G437950 [exp] 604 / 0 AT4G21390 406 / 5e-135 S-locus lectin protein kinase family protein (.1) Potri.011G125601 [exp] 545 / 0 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 540 / 1e-180 AT4G21380 711 / 0.0 receptor kinase 3 (.1) Potri.011G125100 [exp] 538 / 5e-180 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 536 / 2e-179 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411000 [exp] 534 / 8e-179 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125000 [exp] 533 / 2e-178 AT4G27290 790 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023391 [exp] 846 / 0 AT1G11300 520 / 5e-168 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10003156 [exp] 558 / 0 AT3G16030 556 / 0.0 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Lus10014812 [exp] 551 / 0 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10024064 [exp] 524 / 2e-174 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 515 / 2e-171 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 513 / 3e-170 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 501 / 2e-165 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028782 [exp] 499 / 2e-165 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10014811 [exp] 498 / 5e-165 AT4G27290 808 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 499 / 7e-165 AT4G21380 768 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G442200.1 pacid=42789668 polypeptide=Potri.001G442200.1.p locus=Potri.001G442200 ID=Potri.001G442200.1.v4.1 annot-version=v4.1 ATGGCTAACAGAAGCCTTCTTTCCTCCAAAATCCTCTTGATCGTTTTGGTTTGCTTTTGTCCCACCTTTTCTTTAGCAGCAGACACACTCTACCAAGGTG GAGATGCCCTCAATTCTTCAAGTAGACTTGTCTCCAAAAATAGGCTCTTCACCTTAGGATTCGTAAGACTTGGCTCTACTGAGTACAATGCTAGCTACTT GGGAATATGGTACCAAAATGATACAATCCACCCCATCTGGATAGCTAATAGAGACAAACCTATAGCAGATGATTCGGGAGTTCTTGAAATAGATGGAGAT TCAGGAACCATGACAGTTGCATACTCAGGTGGGAATCTTGTTATTTTTTACTCAACTCAATCTCCCACCACAAAGTTAACAGCTACGTTAGAAGATTCAG GTAATTTTGTTCTGAAAGATGCAAATTCTCGCAGCGATCAGATTTTATGGCAAAGCTTTGATGATCCTACCGACACATTCATGCCTGGAATGAAGTTAGG AATCAACCATAAAACTGGTAAAGTCCGGTCCCTTACATCATGGATGAGTGACTCAGTCCCAGCTTCGGGTGCTTTCACATTTGAGTGGGAGCCCAAAAGA CAGGAATTAGTTATTAAGCGACGAACTGAGATTTATTGGACTAGTGGACCATTGAGGAGCAATGGCAGCTTTGAAACTTTTCGGCCCAATCCCGGACTCG ACTATACTTTTCTTATTGTTTCAAACATTGATGAGGATTACTTTATGTTCACGGTGGCAAGAAACAAATTAACTCCTCCGGAGACGGGATTTTCAAAGTG GCTGCTGCAATTTGGTGGGGGGCTAGAAGAGCAAAGCAATGAACAAATTTCTGGAGGCAACCTTTGTAATGGAAACAACATAGAAATGGGATGTGTGAAA TGGGATTCAGAACCTACATGCCGTAGTAGGGACAGATATGAGTTGAGAGCATGTGACTTTTTGGTAGAGGGAGGTCATGCAGTTTATGATAATAATGCTA GTCTCAGCATTAGTGATTGCAGGGAAATCTGCTGGAAAGACTGTACGTGTGCAGGCATTAATATTAGAGGCAGTAATGCCAACAATACTGGATGCACATT TTGGTATGGAAACTTTACGGCAGACCTGAGTGCCAGTTCGATTCAATACTTTGTAATTGTGCAAGACACACAACCAGCAGCAATGAAATCAGGGGAAAGG ATCTGGATATGGATTGTAGTTTCTGTGGCATTTGTTCTATTAGTGACACTAGCAGGTATCTTGTGGTACAGGAGAAGGCAAAGACTCAGAGAGAAGTATC TGGATGAATTAATGACATTGGATGCGATGAATGACACGCAAGAGCTCGAAAGTGATGGAAACAAGGGACATAATTTGAAAGTATATAGTGTTGCAACAAT CATGGCCGCGACAAATTCTTTCTCAGCAAAGAATAAACTTGGACAGGGTGGTTTTGGACCTGTTTACAAGGGGAAATTGCCAGATGGTCGAGAAGTAGCC GTAAAAAGACTATCAAGAACTTCAAGACAAGGTCTTGTGGAATTTAAAAATGAACTTATACTCATAGCTAATCTGCAACATTCGAATCTTGTCAAGCTCC TAGGCTGCTGCGTTGAAGGGGAAGAGAAAATGTTAGTGTACGAGTACATGCCTAATAAAAGTTTGGATTCATTTATCTTTGATCAATCAAGGAGAGAGCT GTTAGACTGGAAGAAACGTTTTAAAATCATTGAAGAGATAGCTCAAGGTCTCCTATACCTTCATAAGTACTCAAGATTAAGGATAATTCATAGGGATTTG AAGGCCAGTAACATACTACTAAATGAAGATCTTAGCCCCAAAATTTCAGACTTCGGTATGGCAAGAATTTTCAAGATTAATGAATTGGAAGCAAACACAA ACCGCATCGTTGGAACTTATGGCTATATGTCCCCTGAGTATGCCATGGAAGGCGTTTTCTCTGTGAAATCTGATGCCTACAGCTTTGGAGTTTTGGTGTT GGAAATTGTGAGCGGTAGGAAAAATCGTGGCCTTCTTCAAATGGATCCCCCTCTCAACCTTGTGGGATATGCATGGGAGCTATGGAAAGAAGGTAACCAA TTTGAGCTAGTGGATTCAACATTGAGGGATTCTTGCTCGGAAGACCAAGTGTTAAGATGCATTCATGTGGGCTTGCTATGCGTAGAAGATAATGTGAACG ATAGGCCTACTATGTCAGATGTTCTATCGATGTTAACTAGTGATGCACAATTACCATTGCTCAAACAGCCAGCATTTTCATGCGCAACATATAGTACGGA CAATCAATCGAATTCAAGCCATGCAGAGGGCAAGGAAGAGGGCAAGGCAGAGGACAAGGCAGAAGGGAATTCCATAAATTACGTATCTATGTCGACTATG GAAGCACGATAG
AA sequence Show only first row Show all	>Potri.001G442200.1 pacid=42789668 polypeptide=Potri.001G442200.1.p locus=Potri.001G442200 ID=Potri.001G442200.1.v4.1 annot-version=v4.1 MANRSLLSSKILLIVLVCFCPTFSLAADTLYQGGDALNSSSRLVSKNRLFTLGFVRLGSTEYNASYLGIWYQNDTIHPIWIANRDKPIADDSGVLEIDGD SGTMTVAYSGGNLVIFYSTQSPTTKLTATLEDSGNFVLKDANSRSDQILWQSFDDPTDTFMPGMKLGINHKTGKVRSLTSWMSDSVPASGAFTFEWEPKR QELVIKRRTEIYWTSGPLRSNGSFETFRPNPGLDYTFLIVSNIDEDYFMFTVARNKLTPPETGFSKWLLQFGGGLEEQSNEQISGGNLCNGNNIEMGCVK WDSEPTCRSRDRYELRACDFLVEGGHAVYDNNASLSISDCREICWKDCTCAGINIRGSNANNTGCTFWYGNFTADLSASSIQYFVIVQDTQPAAMKSGER IWIWIVVSVAFVLLVTLAGILWYRRRQRLREKYLDELMTLDAMNDTQELESDGNKGHNLKVYSVATIMAATNSFSAKNKLGQGGFGPVYKGKLPDGREVA VKRLSRTSRQGLVEFKNELILIANLQHSNLVKLLGCCVEGEEKMLVYEYMPNKSLDSFIFDQSRRELLDWKKRFKIIEEIAQGLLYLHKYSRLRIIHRDL KASNILLNEDLSPKISDFGMARIFKINELEANTNRIVGTYGYMSPEYAMEGVFSVKSDAYSFGVLVLEIVSGRKNRGLLQMDPPLNLVGYAWELWKEGNQ FELVDSTLRDSCSEDQVLRCIHVGLLCVEDNVNDRPTMSDVLSMLTSDAQLPLLKQPAFSCATYSTDNQSNSSHAEGKEEGKAEDKAEGNSINYVSMSTM EAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.001G442200 [exp]	0	1
AT3G23160			Protein of unknown function (D...		Potri.008G164700 [exp]	4.24	0.8373
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Potri.012G145500 [exp]	5.09	0.8490	NHL25.1
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Potri.013G102750 [exp]	10.67	0.7852
AT4G03140			NAD(P)-binding Rossmann-fold s...		Potri.006G207100 [exp]	10.81	0.8275
AT5G38260			Protein kinase superfamily pro...		Potri.017G117340 [exp]	11.61	0.8435
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.016G101300 [exp]	14.42	0.8433
AT5G19380		CLT1	CRT (chloroquine-resistance tr...		Potri.009G069400 [exp]	14.49	0.7885
					Potri.016G140250 [exp]	15.42	0.8292
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Potri.010G034300 [exp]	16.88	0.8376	NTL1.1
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.014G020600 [exp]	19.59	0.8132

Compare expression of checked genes

Potri.001G442200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.