Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36840 546 / 0 ACR10 ACT domain repeats 10, ACT-like superfamily protein (.1) AT2G39570 423 / 9e-147 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1) AT2G03730 60 / 1e-09 ACR5 ACT domain repeat 5 (.1.2) AT4G22780 48 / 7e-06 ACR7 ACT domain repeat 7 (.1) AT3G01990 48 / 7e-06 ACR6 ACT domain repeat 6 (.1) AT1G12420 47 / 1e-05 ACR8 ACT domain repeat 8 (.1) AT1G69040 43 / 0.0003 ACR4 ACT domain repeat 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G154600 [exp] 737 / 0 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.010G228500 [exp] 570 / 0 AT2G36840 525 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.008G033200 [exp] 553 / 0 AT2G36840 513 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.001G237100 [exp] 446 / 1e-155 AT2G39570 533 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.008G052900 [exp] 408 / 7e-141 AT2G39570 574 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.010G207700 [exp] 404 / 5e-139 AT2G39570 560 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.001G115600 [exp] 45 / 7e-05 AT1G12420 627 / 0.0 ACT domain repeat 8 (.1) Potri.002G074800 [exp] 45 / 7e-05 AT1G76990 676 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Potri.010G138600 [exp] 43 / 0.0003 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014418 [exp] 634 / 0 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10023921 [exp] 634 / 0 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10017470 [exp] 569 / 0 AT2G36840 507 / 1e-179 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10004948 [exp] 427 / 3e-148 AT2G39570 479 / 7e-169 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10005157 [exp] 417 / 5e-144 AT2G39570 587 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10001702 [exp] 414 / 3e-143 AT2G39570 582 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10005447 [exp] 329 / 5e-110 AT2G36840 385 / 2e-132 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10028812 [exp] 307 / 1e-102 AT2G36840 288 / 1e-95 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10041543 [exp] 45 / 7e-05 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10012550 [exp] 45 / 8e-05 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G442600.9 pacid=42788015 polypeptide=Potri.001G442600.9.p locus=Potri.001G442600 ID=Potri.001G442600.9.v4.1 annot-version=v4.1 ATGGGAATTTTATATGATGACGATGTAGTGGTAATTAGACAATCAGAGAAAGAAGGAGACCCTACTGTTATCACTGTGAATTGTCCTGACAAGACTGGTC TTGGTTGTGATTTATGCCGTATCATTCTCTTCTTTGGTCTCAGCATTGTTAGAGGAGATGTGTCTACGGATGGAAAATGGTGCTACTTAGTGTTTTGGGT GGTTGGCAAATCAACAACAAGGTGGGGTTTATTGAAGAAGAGACTAGTAGAGGCATGTCCTTCATGTTCCTCAGCTTCTGGGTTGTCTTTTTACCGTTCA GAATTGCAGCCTCCAAGACCACCTGATGTTTTTCTGTTGAAGTTATCTTGTCAAGACAGAAGAGGGCTTTTACATGATGTGACCAGTGTGCTTTGTGAGC TTGAACTCACTATAAAAAAAGTGAAGGTATCCACGACACCAGATGGGAGAGTGATCGACCTATTCTTCATTACAGACAACAGGGAGCTCCTGCATACAAA TAAGAGAAAGGAGGATACATGTGATCACTTAAAAGCTGTTACGGGAAATTCCATGATAAGCTGTGACATAGAAATTGTTGGCCCTGAAATTACTGCATGT TCAGCGGAATCTTCATTTCTTCCAACTGCAATCACAGAAAACATTCTCCCCTTGGAAATGCCAGATGAACTCCCTAGTTCACTAACTTCCACCAGTGTTT CTGTCAATATGGACAACTCGCTGAGTCCAGGTCACACCCTTGTCCAAATTGTGTGCCAAGATCACAAAGGTCTTCTTTATGACATAATGAGGACTCTAAA GGATTATAATATACAGATTTCATATGGGCGCTTTTCCATGAATCACGGAAGGGCCTGTGATATTGACTTATTTCTTGTGCAAACCGATGGGAAGAAAATA GTTGATCCTAGAAAGCAGAAAGCATTGTCCTCTCGTTTGGAGATGGAACTAGTGCGCCCTCTACGAGTAGCCACTGTTAGCCGTGGTCCTGATACTGAGC TGCTGGTGGCGAATCCTGTGGAGTTATCTGGCAAGGGCCGGCCTCTTGTTTTTCATGACATCACTCTTGCTCTGAAGATGCTTAACACATGCATTTTCTC GGCCGAGATTAGAAGGCGCATGATTGGAGATCGGGAATTCGAAGTGTACAGAGTCTTACTTGATGAAGGGGAAGGCTTGGCTGTACCAAGAAGCAAAATT GAGAAACAAGTTTGGAAGATGTTAATGGGTTGGGAGCAATGA
AA sequence Show only first row Show all	>Potri.001G442600.9 pacid=42788015 polypeptide=Potri.001G442600.9.p locus=Potri.001G442600 ID=Potri.001G442600.9.v4.1 annot-version=v4.1 MGILYDDDVVVIRQSEKEGDPTVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYLVFWVVGKSTTRWGLLKKRLVEACPSCSSASGLSFYRS ELQPPRPPDVFLLKLSCQDRRGLLHDVTSVLCELELTIKKVKVSTTPDGRVIDLFFITDNRELLHTNKRKEDTCDHLKAVTGNSMISCDIEIVGPEITAC SAESSFLPTAITENILPLEMPDELPSSLTSTSVSVNMDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQISYGRFSMNHGRACDIDLFLVQTDGKKI VDPRKQKALSSRLEMELVRPLRVATVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLNTCIFSAEIRRRMIGDREFEVYRVLLDEGEGLAVPRSKI EKQVWKMLMGWEQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Potri.001G442600 [exp]	0	1
AT5G06560			Protein of unknown function, D...		Potri.016G065200 [exp]	2.44	0.7774
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Potri.008G045300 [exp]	6.00	0.7649
AT1G55690			Sec14p-like phosphatidylinosit...		Potri.011G168300 [exp]	6.92	0.6837
AT5G20190			Tetratricopeptide repeat (TPR)...		Potri.018G130300 [exp]	7.07	0.7128
AT2G01260			Protein of unknown function (D...		Potri.008G124000 [exp]	9.48	0.7115
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Potri.003G071700 [exp]	10.90	0.6762	ERF39,ERF1.4
AT5G56460			Protein kinase superfamily pro...		Potri.003G222600 [exp]	11.66	0.6490
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Potri.002G031900 [exp]	12.00	0.7455	GBF5.2
AT1G68910		WIT2	WPP domain-interacting protein...		Potri.010G135900 [exp]	12.80	0.7162
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Potri.010G216200 [exp]	28.74	0.6844

Compare expression of checked genes

Potri.001G442600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.