Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19490 1142 / 0 ATVPS54 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G154000 [exp] 1661 / 0 AT4G19490 1174 / 0.0 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038410 [exp] 1268 / 0 AT4G19490 1263 / 0.0 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2) Lus10023394 [exp] 1220 / 0 AT4G19490 1179 / 0.0 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2) Lus10023393 [exp] 439 / 2e-145 AT4G19490 490 / 3e-165 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2) Lus10038409 [exp] 104 / 9e-24 AT1G32540 179 / 2e-55 lsd one like 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07928 [poplar] [flax] Vps54 Vps54-like protein CL0295 [poplar] [flax] Vps51 PF10475 [poplar] [flax] Vps54_N Vacuolar-sorting protein 54, of GARP complex
Representative CDS sequence Show only first row Show all	>Potri.001G442900.11 pacid=42791213 polypeptide=Potri.001G442900.11.p locus=Potri.001G442900 ID=Potri.001G442900.11.v4.1 annot-version=v4.1 ATGTATTCTCTTCCTTCTTCCCTGTCAGGAAGGCAACCCAACAATTCCAATACCATCCAAAACCTCTCTTCCGTCCTCAACAACCCTCACTCCTTCAAAT CCTCCTCCGATCCCTCCGCCTGGATCGGCTGGTGGTCCGTTGCTCCTCCAGATTTCACTCCCGTAATCACCAAACACCCACAACCCGATATCTCCCGATC CGATTTCCTCCCCTACTTGTCCTCCATCTCCGACACCCACTCTCGTTTCGAAGACATCAAAAACCATACCAAAAACAACGAGCAGGAATCCAATTTGGAC TTGGATTTGGATGCTGTAGGGCAAGGCGAGGCGCTTGTTGCGTGTTTGAGGGAAGTTCCGTCGCTGTATTTTAAAGAGGATTTTGCATTGGAAGATGGGC CCACGTTTCATGCGGCGTGTCCGTTTACGAATGGGGTGGCGAATTTGTCGTTGCAGGAGAAGTTGACTCAGTATTTGGACGTGGTGGAGGTGCATTTGGT GAAGGAGATTTCGTTGCGGTCGAATTCGTTTTTCGAGGCGCAAGGGCAGTTGGAGGATTTGAATGGGAAGATTGTGGAGGGGTGTGAGAGGATTAGGGAG TTGAAGGAGACTATTAGGGTTTTGGATAAGAATTTGGTTGAGTCAGCGATGGAGATTCATGAGTTGAATGTTAGTAGAGGGAATTTGGTTGCTTTGCAAA ATAAGTTGAGCCTTATTTTGTATGTTAATCAGGCTCTTTCCACTATTAAATTGCTTGTTGCATCTGCAGATTGTGCCGGAGCATTGGATGTTACTGATGA TTTGCAGCAGTTGTTGAATGGAGATGAGCTGACTGGTCTACATTGTTTTCGTCACCTACGGGATAATGTAGCTGCTGCAATAGATTCCATAAACAGCATT CTTTCAGCGGAATTTATGCAAGCTTCAATACATGTTGCTAGGGATAAAGATTTGCTTCTTTTATCCAAAGCAAAAACCAGGGATTCCATGTATATGAATG GAAAAGATGAAGAACAGGTTAAGTTGGATGATGAAGAGACCTCCAATTTTCGAGATCGTCTTCTCCCTCTCATTGTTGGGTTGCTTAGAACTGCCAAGCT CCCCTCAGTGTTGAGAATATACCGAGATACTCTTACGGCCAGTATGAAAACAACTATTAAGAATGCAGTTGCCGAGCTGCTTCCTGCCTTTTCGGCCCAA TCTCTGGAGTCAGAGCGAACATCTGCAGAGCGAACAGCTGATACAGATGGTGGAGGTTTATCACTAGCGAGCAAGTTAAGGAGCTTGTCATCTGAAAACT TTGTGCTGCTTTTAAGTGCTATTTTCAACATCGTACAGGCACACTTAGTGCAGGCTGCTGAAGTGAAAAAAGCAATTGAGTGGATTATGTGCAATGTTGA TGGACACTATGCCGCTGATTCAGTTGCTGCTGCAATTTCAGTTGGTGCAGCTACTGCTGAAACAGCTTATGAGAGTGGTAGCCAAGGCAGTTCACTTCTC CCCTTTTCTCCACAGAGAAGTACTTCCAAGCTTACATCATCTCAGCTGAAATCAAATGATGCAGCAAGCCCCTCAAATATTTCGAGAAATTTTAGGGCTG ATGTATTGAGAGAGAACACAGAAGCTGTCTTTGCTGCTTGTGATGCTGCTCATGGAAGATGGGCGAAGCTCCTTGGGGTCCGTGCTGTTCTTCATCCTAA GCTGAGATTGGTGGAATTTTTAAGCATATACAACATCACCCAAGAGTTTATAACTGCCACTGAAAAGATTGGTGGAAGATTGGGGTATAGTATTCGTGGA ACAATGCAATCACAGGCCAAGGGTTTTGTTGATTTCCAACATGAAATGCGAATGACAAAAATTAAGGCAGTGCTTGATCAGGAGACATGGGTGGAAGTAG ATGTCCCTGATGAATTTCAGGCTATTGTAGCTTCATTGTTTTATTCTGAACCATTGATCTCTGAGGCTCTAAATGATACTCAAGTTGAGATGACAACAAG CTATGGTGAAGTGGGCACAAGCAATGATGGTTCATTTGTGATTGACAATGAAGCACAAAATGCTGCACAAAAACTAGTGAGAATGAACTCTACAGAGGTG TCTTTGCAAAATTCTGTGCAAAAAAAATCGACTCCCTCAACTGAGCCAACTGAAAGTAATAAAGTCATGACTGCAACATCTTCAGCTCAGCATAACAACC ATAAGGTAAAGGAGCGCGGGAAATCCACTTCTCAAACACTTTCTTGTGGAGGTGTTGGTTATCACATGGTAAACTGTGGCTTAATATTGCTGAAGATGTT GTCAGAATACATGGATATGAATAATTATTTGCCAACGCTATCTTCAGAAGTTGTTCATCGTGTTGTGGAGATCTTAAAATTCTTCAATACAAGGACTTGT CAACTTATTCTCGGAGCTGGTGCCATGCAGGTGTCAGGTTTGAAATCTATTACATCGAAGCACTTGGCCCTTGCTAGTCAAGTCATCAGTTTTGTATATG CTATTATTCCTGAAATCAGGCGAGTTCTTTTCCTTAAAGTACCTGAAGCACGGAAAGCATTACTATTGTCAGAGATTGATCGAGTAGCACAGGATTATAA GGTTCATCAAGAGGAGATACTTACAAAGCTGGTTCAGATAATGAGGGAAAGGGTGTTGTATCATCTACGTAAATTGCCTCCAGTTGTCGAGAGCTGGAAT AGACCCGTAGATACTGATTCACAGCCTAGTTTGATTGCTAAAGAAATTGTAAAGGAGGTTAACTACCTACAACGTATCTTGTCTAGAACTTTACATGAGG CGGATATTCAAGCGATTTTCAGGCAAGTGGTTATAGACTTGCATAAAGAAACTTCAGAAGCATTTTCACGGTTTGAGATCAGCAGTCCGCAAGCAAAGGG CAGGCTTCACCGGGATATTACACTTATCCTTGGATGCATTAGATCATTACCTTCTGGTAGCTCTAGCGAATCTGGCACCCTTAACTGGGGACAACTTGAT GAATTCTTCCTACAAAGATTTGGGTCTGAAGCTGGCTGA
AA sequence Show only first row Show all	>Potri.001G442900.11 pacid=42791213 polypeptide=Potri.001G442900.11.p locus=Potri.001G442900 ID=Potri.001G442900.11.v4.1 annot-version=v4.1 MYSLPSSLSGRQPNNSNTIQNLSSVLNNPHSFKSSSDPSAWIGWWSVAPPDFTPVITKHPQPDISRSDFLPYLSSISDTHSRFEDIKNHTKNNEQESNLD LDLDAVGQGEALVACLREVPSLYFKEDFALEDGPTFHAACPFTNGVANLSLQEKLTQYLDVVEVHLVKEISLRSNSFFEAQGQLEDLNGKIVEGCERIRE LKETIRVLDKNLVESAMEIHELNVSRGNLVALQNKLSLILYVNQALSTIKLLVASADCAGALDVTDDLQQLLNGDELTGLHCFRHLRDNVAAAIDSINSI LSAEFMQASIHVARDKDLLLLSKAKTRDSMYMNGKDEEQVKLDDEETSNFRDRLLPLIVGLLRTAKLPSVLRIYRDTLTASMKTTIKNAVAELLPAFSAQ SLESERTSAERTADTDGGGLSLASKLRSLSSENFVLLLSAIFNIVQAHLVQAAEVKKAIEWIMCNVDGHYAADSVAAAISVGAATAETAYESGSQGSSLL PFSPQRSTSKLTSSQLKSNDAASPSNISRNFRADVLRENTEAVFAACDAAHGRWAKLLGVRAVLHPKLRLVEFLSIYNITQEFITATEKIGGRLGYSIRG TMQSQAKGFVDFQHEMRMTKIKAVLDQETWVEVDVPDEFQAIVASLFYSEPLISEALNDTQVEMTTSYGEVGTSNDGSFVIDNEAQNAAQKLVRMNSTEV SLQNSVQKKSTPSTEPTESNKVMTATSSAQHNNHKVKERGKSTSQTLSCGGVGYHMVNCGLILLKMLSEYMDMNNYLPTLSSEVVHRVVEILKFFNTRTC QLILGAGAMQVSGLKSITSKHLALASQVISFVYAIIPEIRRVLFLKVPEARKALLLSEIDRVAQDYKVHQEEILTKLVQIMRERVLYHLRKLPPVVESWN RPVDTDSQPSLIAKEIVKEVNYLQRILSRTLHEADIQAIFRQVVIDLHKETSEAFSRFEISSPQAKGRLHRDITLILGCIRSLPSGSSSESGTLNWGQLD EFFLQRFGSEAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Potri.001G442900 [exp]	0	1
					Potri.004G093250 [exp]	2.64	0.8958
AT5G50780			Histidine kinase-, DNA gyrase ...		Potri.012G102800 [exp]	6.00	0.8454
AT1G54850			HSP20-like chaperones superfam...		Potri.013G024900 [exp]	8.12	0.8581
AT4G37940	MADS	AGL21	AGAMOUS-like 21 (.1)		Potri.009G079000 [exp]	8.66	0.8453
AT5G19485			transferases;nucleotidyltransf...		Potri.009G066400 [exp]	16.30	0.8414
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.002G106566 [exp]	16.88	0.8475
AT3G51390			DHHC-type zinc finger family p...		Potri.005G104700 [exp]	17.40	0.7459
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Potri.015G008401 [exp]	22.27	0.8351
AT5G55090		MAPKKK15	mitogen-activated protein kina...		Potri.003G130000 [exp]	26.40	0.8141
AT1G21740			Protein of unknown function (D...		Potri.002G082000 [exp]	27.34	0.8064

Compare expression of checked genes

Potri.001G442900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.