Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 245 / 4e-67 NB-ARC domain-containing disease resistance protein (.1) AT4G27190 246 / 7e-67 NB-ARC domain-containing disease resistance protein (.1) AT4G26090 222 / 2e-59 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G12280 190 / 4e-49 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G63020 188 / 1e-48 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12220 186 / 5e-48 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G61180 183 / 4e-47 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G12210 180 / 6e-46 RFL1 RPS5-like 1 (.1) AT5G05400 176 / 1e-44 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12290 175 / 1e-44 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G419800 [exp] 1902 / 0 AT4G27190 253 / 4e-69 NB-ARC domain-containing disease resistance protein (.1) Potri.001G420000 [exp] 1880 / 0 AT4G27190 249 / 4e-68 NB-ARC domain-containing disease resistance protein (.1) Potri.001G445700 [exp] 1837 / 0 AT4G27190 267 / 5e-74 NB-ARC domain-containing disease resistance protein (.1) Potri.001G443400 [exp] 1830 / 0 AT4G27220 227 / 3e-61 NB-ARC domain-containing disease resistance protein (.1) Potri.001G444500 [exp] 1811 / 0 AT4G27190 241 / 5e-65 NB-ARC domain-containing disease resistance protein (.1) Potri.001G444050 [exp] 1743 / 0 AT4G27220 261 / 4e-72 NB-ARC domain-containing disease resistance protein (.1) Potri.001G447132 [exp] 1708 / 0 AT4G27190 254 / 3e-69 NB-ARC domain-containing disease resistance protein (.1) Potri.001G444000 [exp] 1673 / 0 AT4G27190 224 / 8e-60 NB-ARC domain-containing disease resistance protein (.1) Potri.001G446332 [exp] 1640 / 0 AT4G27220 241 / 1e-65 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005218 [exp] 105 / 1e-22 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 102 / 1e-21 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 100 / 4e-21 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 100 / 1e-20 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10018937 [exp] 97 / 4e-20 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 97 / 7e-20 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10021769 [exp] 95 / 3e-19 AT4G33300 583 / 0.0 ADR1-like 1 (.1.2) Lus10041243 [exp] 94 / 5e-19 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 92 / 2e-18 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 92 / 3e-18 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01637 [poplar] [flax] ATPase_2 ATPase domain predominantly from Archaea
Representative CDS sequence Show only first row Show all	>Potri.001G446650.2 pacid=42793422 polypeptide=Potri.001G446650.2.p locus=Potri.001G446650 ID=Potri.001G446650.2.v4.1 annot-version=v4.1 ATGGCTATCGAAAGTGTTGGTGGATCCATTGTATCTAAAATAGCAGAACTCTTGGTGGAACCAACAGTAAGGCAGTTCCGTTACATGTTCTGTTTCAACA ATTTTGTTCAAGAATTCGATGAACAAATGATGAACCTGGCTTTGGCATTTTATCCTCTGCAAGATGCTGTCGACGTTGCTAAAAGGAATGCTGAAGAAAT TGAGATTAATGTCAACACATGGCTGGAAAAAGCAAAAAACGAAATTGAAGGTGTGAATCATTTGCAAAATGAAAAGGGAAAAATTGGCAAATGCTTTACT TGGTGTCCAAATCCGACGCGACAATTGAAGTTAAGCAAGGCACTGGCAAAGAAGACGGAGACTTTGAGAAAACTTGAAGCAAACAGTAAGTTTCCAAAAG TGTCCTACAAACCACCTCTTCAAGGCATAGAATTTCTTCCATCGGAGGAATTGACGCCTTCAGAATCGTCAAAAGCAGCTTTCGAACAGATTATGAAAGC TCTCAAAGATGACAATGTCAATATGATCGGACTGTACGGCATGGGAGGGGTGGGTAAAACCACTCTAGTGAAAGAAGTAGGAAGGAGAGCCAAAGAGTCG AAGCTGTTTGATGAAGTTTTGATGGCTACACTGTCCCAGAATCCAAATTTCATAGACATTCAGGATCGAATGGCAGATAGTTTAGGTCTGCATTTTGGCG AAAAGACTAAAGAAGGGAGAGCAGATCGATTATGGCAGAGACTGAAGACAGAGAAGAAGATGCTTATAATCCTGGATGATGTTTGGAAAGTTATTAACTT GAAAGAGATAGGGATCCCATTTGGTGATGCTCACAGGGGTTGTAAAATTCTTCTAACAACACGTCTTGAAAACATATGTTCTTCTATGAAGTGCCAGCCA AAAGTGTTCTTAAGTCTCTTATCAGAAAATGAAGCATGGGGTTTATTCAAAATCAATGCAGGTTTACATGATGAGGACTCTACCTTGAACACAGTGGCGA AGGAGGTTGCGAGAGAATGTAAAGGATTGCCTATAGCACTTGTGACAGTGGGAAGGGCTTTAAGAGATAAATCTGCTGTTGAGTGGGAAGTAGCGTCTAA AGAGCTCAAAAACTCTCAATTTCGGCACATGGATGAACTTGATGAACAAGAAAATGCATATGCATGTCTTAAGTTGAGCTATGATTATTTGAAGCACGAG AAAGCCAAGTTATGTTTCTTGCTATGCTGTTTATTTCCAGAAGATTACGACATTCCAATCGAGGAGTTGACGAGATATGCAGTTGCCTATGGGTTACATC AAGATGTGGAGTCCATTGAAGATGCAAGGAAACGAGTTTGTGTGGCAATCAAAAACCTCAAAGCTTGTTGTATGCTGTTAGGAACTGAAAGTGAAGAATA TGTGAAAATGCATGACTTGGTTCGTGATGTTGCTATTCAGATAGCATCATCAGAAAAATACGGATTCATGGTAAAGGCTGGCTTTGAGTTGAAGGAGTGG CCAGTGAGCAATAAAAGCTTTGAAGCTTGTACAGTAATTTCGTTAATGGGCAATAAACTCACAGAACTTCCTGAAGGATTGGTGTGTCCACAGCTCAAAG TTCTATTGTTAGGACTGGATGATGGTTTGAATGTTCCAGAGAGGTTTTTTGAAGGGATGAAAGAAATTGAAGTTTTGTCTCTAAAGGGAGGGTGTTTGTC ATTGCAATCACTTCAATTCTCAACGAACCTTCAATCGTTGCTGTTGATCGAGTGTGAATGCAAGGTCCTCATTTGGTTGAGAAAGCTGCAAAGACTTAAG ATTCTTGGTTTCATTGGGTGCGGCTCCGTTGAAGAATTACCTGATGAAATTGGGGAGCTCAAGGAGTTAAGGTTGTTGGATTTGACAGGTTGTCGATTCC TAAAAAGGATTCCAGTGAATTTGATAGGAAGGTTGAAGAAGTTAGAAGAACTGTTGATCGGGGATGGGAGCTTTGAGGGATGGGATGTTGTTGGATGTGA CAGCACAGAAGGAATGAATGCAAGCCTAACAGAGCTAAATTCGCTGTCTCATTTAGCTGTATTATCATTGAAGATACCGAAGGTTGAATGCATTCCCAAA GATTTTGTTTTTCCCAGGTTGCTCGAATATGATATAGTGTTAGGGGATCGGTATTATTTATTCTATAAAAAACACACAGCCTCGACAAGATTATATTTGG GTGATATAAACGCCGCATCCTTAAATGCAAAGACGTTTGAGCAGTTGTTTCCTACTGTGTCTCATATTGATTTTTGGAGAGTGGAGAGTTTAAAAAATAT AGTATTGTCCTCTGATCAGATGACCACCCATGGCCATTGGTCGCAAAAGGACTTCTTTCAAAGATTAGAACATGTAGAAGTGAGCGCTTGTGGGGATATT CGCACTCTGTTTCAAGCAAAATGGCGGCAAGCTTTGAAAAATCTAAGGAGTGTGGAAATTGATCACTGCGAATCATTGGAAGAGGTATTTGAATTGGGTG AGGCTGATGAAGGAATGAACGAGGAGGAGGAGCTGCCGCTGCTGCCATCTTTAACAACGTTACGGCTGTTGCATTTACCTGAGCTCAATTGTATATGGAA GGGGCTCACCAGACATGTCAGCCTCCAAAATCTTATTTTTCTGGAGTTGCACTATCTTGACAAACTGACATTTATCTTCACACCGTTCCTCGCTCAGTGT CTTATTCATCTGGAAACACTACGGATAGGAGATTGCGATGAATTGAAGCGTCTTATCAGAGAAGAGGATGGTGAAAGGGAAATAATTCCAGAGTCTCTTG GCTTCCCAAAATTAAAAACTCTCTCTATAAGTCGCTGTGATGAACTGGAATATGTCTTCCCTGTCTCCGTGTCTCCAAGTCTTCAGAACCTGGAAGAGAT GGAGATTGATTTTGCTGACAATTTAAAGCAAGTATTTTACAGTGGAGAAGGAGATGACATCATCGTCAAGTCTAAAATTAAAGATGGCATCATCGACTTC CCTCAGCTAAGAAAATTGTATCTTTCAAAGTGCAGCTTTTTTGGTCCAAAGGATTTTGCTGCCCAATTGCCTTCTTTGCAATGTCTAAGCATCTGTGGCC ACGAAGAAGGGGGTAATTTGTTGGCACAGCTTCGAGTAGGGTTTATGAATTTGAAAAAAATATCTATTAAAAACATGGAAGGAGTACAAGATTTAATGCA AGTTGGATGTTTGGTAACTAATAGAAGAGGTGGGCATGAACTTTCACTCTTGAGTTCGGAAACATTACATTTGAACTTATTGCCAGACTTGAGGTGTATT TGGAAGGGTCTCATACCAAACAATTTGACTACTTTGGAGGTGAAAAATTGTGACAGACTGACACATGTATTCACAACCAACATGATTGCTAGTCTAGTTC AACTTAATGTTCTTGAGATATCAAATTGTGAGGAATTGGAGCAAATAATTGCTAAGGATAATGAGGATGAAAATAATCAAATATTTTCAGGAAGTGATCT CCAATCTTCATGCTTCCCTAATTTGTGTCGCCTTGAGATCACAGGATGCAACAAGTTGAAGAGTCTCTTTCCAGTAGCTATGACTTCAGGTCTCAAAAGG CTTCAAATACTTAAAGTAAAAGAATCCTCTCAATTATTGGGAGTATTTGGGCAAGATGATCATGCTTCACCTGCCAATGTTGAGAAGGAGATGGTGCTCC CTGATCTGGAGTGGCTGATTCTAGAAAAATTACCAAGCATTGTCTACTTCAGTCATGGATGTTGTGATTTCATATTCCCTTGTTTGAGGAGGTTGGAGGT GCGTCAATGTCCAAAGCTGACTACAAAATTTGCTACTACATCAAATGGTTCAATGAGTGCTCAATCAGAGGTATCTCAAGCAGTTGAGGATTCAAGTACT GGGTGCTCCGTGCCAACCAGAACTTATAGAATATGGACCCCATATAATGGGTGGGAAGAGAAAAAGGAAGAGGATGTGGTCATAATGATTGAGTCAGATG ATTAG
AA sequence Show only first row Show all	>Potri.001G446650.2 pacid=42793422 polypeptide=Potri.001G446650.2.p locus=Potri.001G446650 ID=Potri.001G446650.2.v4.1 annot-version=v4.1 MAIESVGGSIVSKIAELLVEPTVRQFRYMFCFNNFVQEFDEQMMNLALAFYPLQDAVDVAKRNAEEIEINVNTWLEKAKNEIEGVNHLQNEKGKIGKCFT WCPNPTRQLKLSKALAKKTETLRKLEANSKFPKVSYKPPLQGIEFLPSEELTPSESSKAAFEQIMKALKDDNVNMIGLYGMGGVGKTTLVKEVGRRAKES KLFDEVLMATLSQNPNFIDIQDRMADSLGLHFGEKTKEGRADRLWQRLKTEKKMLIILDDVWKVINLKEIGIPFGDAHRGCKILLTTRLENICSSMKCQP KVFLSLLSENEAWGLFKINAGLHDEDSTLNTVAKEVARECKGLPIALVTVGRALRDKSAVEWEVASKELKNSQFRHMDELDEQENAYACLKLSYDYLKHE KAKLCFLLCCLFPEDYDIPIEELTRYAVAYGLHQDVESIEDARKRVCVAIKNLKACCMLLGTESEEYVKMHDLVRDVAIQIASSEKYGFMVKAGFELKEW PVSNKSFEACTVISLMGNKLTELPEGLVCPQLKVLLLGLDDGLNVPERFFEGMKEIEVLSLKGGCLSLQSLQFSTNLQSLLLIECECKVLIWLRKLQRLK ILGFIGCGSVEELPDEIGELKELRLLDLTGCRFLKRIPVNLIGRLKKLEELLIGDGSFEGWDVVGCDSTEGMNASLTELNSLSHLAVLSLKIPKVECIPK DFVFPRLLEYDIVLGDRYYLFYKKHTASTRLYLGDINAASLNAKTFEQLFPTVSHIDFWRVESLKNIVLSSDQMTTHGHWSQKDFFQRLEHVEVSACGDI RTLFQAKWRQALKNLRSVEIDHCESLEEVFELGEADEGMNEEEELPLLPSLTTLRLLHLPELNCIWKGLTRHVSLQNLIFLELHYLDKLTFIFTPFLAQC LIHLETLRIGDCDELKRLIREEDGEREIIPESLGFPKLKTLSISRCDELEYVFPVSVSPSLQNLEEMEIDFADNLKQVFYSGEGDDIIVKSKIKDGIIDF PQLRKLYLSKCSFFGPKDFAAQLPSLQCLSICGHEEGGNLLAQLRVGFMNLKKISIKNMEGVQDLMQVGCLVTNRRGGHELSLLSSETLHLNLLPDLRCI WKGLIPNNLTTLEVKNCDRLTHVFTTNMIASLVQLNVLEISNCEELEQIIAKDNEDENNQIFSGSDLQSSCFPNLCRLEITGCNKLKSLFPVAMTSGLKR LQILKVKESSQLLGVFGQDDHASPANVEKEMVLPDLEWLILEKLPSIVYFSHGCCDFIFPCLRRLEVRQCPKLTTKFATTSNGSMSAQSEVSQAVEDSST GCSVPTRTYRIWTPYNGWEEKKEEDVVIMIESDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27190			NB-ARC domain-containing disea...		Potri.001G446650 [exp]	0	1
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Potri.008G082400 [exp]	2.64	0.8229
AT4G27190			NB-ARC domain-containing disea...		Potri.001G447132 [exp]	3.16	0.7890
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Potri.008G082700 [exp]	3.87	0.8073
AT4G27220			NB-ARC domain-containing disea...		Potri.001G425500 [exp]	14.49	0.7678
AT4G27190			NB-ARC domain-containing disea...		Potri.001G444500 [exp]	16.73	0.7015
AT3G01175			Protein of unknown function (D...		Potri.017G084200 [exp]	17.77	0.6365
AT4G34660			SH3 domain-containing protein ...		Potri.001G128800 [exp]	18.70	0.6775
AT1G67420			Zn-dependent exopeptidases sup...		Potri.010G060500 [exp]	18.84	0.6433
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Potri.017G133200 [exp]	19.23	0.6769
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Potri.005G089800 [exp]	19.74	0.6815

Compare expression of checked genes

Potri.001G446650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.