Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27190 165 / 4e-44 NB-ARC domain-containing disease resistance protein (.1) AT4G27220 156 / 4e-41 NB-ARC domain-containing disease resistance protein (.1) AT5G63020 149 / 8e-39 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12210 148 / 3e-38 RFL1 RPS5-like 1 (.1) AT1G12220 144 / 6e-37 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G61180 142 / 3e-36 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G15890 142 / 3e-36 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12280 141 / 7e-36 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61310 140 / 2e-35 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61190 139 / 3e-35 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G446650 [exp] 863 / 0 AT4G27190 247 / 2e-67 NB-ARC domain-containing disease resistance protein (.1) Potri.001G420000 [exp] 748 / 0 AT4G27190 249 / 4e-68 NB-ARC domain-containing disease resistance protein (.1) Potri.001G419800 [exp] 698 / 0 AT4G27190 253 / 4e-69 NB-ARC domain-containing disease resistance protein (.1) Potri.001G443400 [exp] 697 / 0 AT4G27220 227 / 3e-61 NB-ARC domain-containing disease resistance protein (.1) Potri.001G444050 [exp] 696 / 0 AT4G27220 261 / 4e-72 NB-ARC domain-containing disease resistance protein (.1) Potri.001G446016 [exp] 674 / 0 AT4G27190 281 / 4e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.001G445150 [exp] 665 / 0 AT4G27190 201 / 2e-52 NB-ARC domain-containing disease resistance protein (.1) Potri.001G445700 [exp] 662 / 0 AT4G27190 267 / 5e-74 NB-ARC domain-containing disease resistance protein (.1) Potri.001G444500 [exp] 652 / 0 AT4G27190 241 / 5e-65 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 98 / 2e-21 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 92 / 2e-19 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 91 / 4e-19 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 91 / 5e-19 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10006794 [exp] 89 / 6e-19 AT3G14470 264 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 89 / 3e-18 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 86 / 1e-17 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10021769 [exp] 85 / 3e-17 AT4G33300 583 / 0.0 ADR1-like 1 (.1.2) Lus10020016 [exp] 85 / 4e-17 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 84 / 6e-17 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01637 [poplar] [flax] ATPase_2 ATPase domain predominantly from Archaea
Representative CDS sequence Show only first row Show all	>Potri.001G446966.2 pacid=42789194 polypeptide=Potri.001G446966.2.p locus=Potri.001G446966 ID=Potri.001G446966.2.v4.1 annot-version=v4.1 ATGGCTATCGAAAGTGTTGGTGGATCCATTGTATCTAAGATAGCAGAACTCTTGGTGGAACCAACAATAAGGCAGTTCCGTTACATGTTCTGTTTCAACA ATTTTGTTCAAGAATTCGATGAACAAATGATGAACCTGGCTTTGGCATTTTATCCTCTGCAAGATGCTGTCGATGTTGCTAAAAGGAATGCTGAAGAAAT TGAGATTAATGTCAACACATGGCTGGAAAAAGCAAAAAACGAAATTGAAGGTGTGAATCATTTGCAAAATGAAAAGGGAAAAATTGGCAAATGCTTTACT TGGTGTCCAAATCCGACGCGACAATTGAAGTTAAGCAAGGCACTGGCAAAGAAGACGGAGACTTTGAGAAAACTTGAAGCAAACAGTAAGTTTCCAAAAG TGTCCTACAAACCACCTCTTCAAGGCATAGAATTTCTTCCATCGGAGGAATTGACGCCTTCAGAATCGTCAAAAGCAGCTTTCGAACAGATTATGAAAGC TCTCAAAGATGACAATGTCAATATGATCGGACTGTACGGCATGGGAGGGGTGGGTAAAACCACTCTAGTGAAAGAAGTAGGAAGGAGAGCCAAAGAGTCG AAGCTGTTTGATGAAGTTTTGATGGCTACACTGTCCCAGAATCCAAATGTCATAGACATTCAGGATCGAATGGCAGATAGTTTAGGTCTGCATTTTGGCG AAAAGACTAAAGAAGGGAGAGCAGATCGATTATGGCAGAGACTGAAGACAGAGAAGAAGATGCTTATAATCCTGGATGATGTTTGGAAAGTTCTTAACTT GAAAGAGATAGGGATCCCATTTGGTGATGCTCACAGGGGTTGTAAAATTCTTCTAACAACACGTCTTGAAAACATATGTTCTTCTATGAAGTGCCAGCCA AAAGTGTTCTTAAGTCTCTTATCAGAAAATGAAGCATGGGGTTTATTCAAAATCAATGCAGGTTTACATGATGAGGACTCTACCTTGAACACAGTGGCGA AGGAGGTTGCGAGAGAATGTAAAGGATTGCCTATAGCACTTGTGACAGTGGGAAGGGCTTTAAGAGATAAATCTGCTGTTGAGTGGGAAGTAGCGTCTAA AGAGCTCAAAAACTCTCAATTTCGGCACATGGATGAACTTGATGAACAAGAAAATGCATATGCATGTCTTAAGTTGAGCTATGATTATTTGAAGCACGAG AAAGCCAAGTTATGTTTCTTGCTATGCTGTTTATTTCCAGAAGATTACGACATTCCAATCGAGGAGTTGACGAGATATGCAGTTGCCTATGGGTTACATC AAGATGTGGAGTCCATTGAAGATGCAAGGAAACGAGTTTGCGCAACACTCTCTTGA
AA sequence Show only first row Show all	>Potri.001G446966.2 pacid=42789194 polypeptide=Potri.001G446966.2.p locus=Potri.001G446966 ID=Potri.001G446966.2.v4.1 annot-version=v4.1 MAIESVGGSIVSKIAELLVEPTIRQFRYMFCFNNFVQEFDEQMMNLALAFYPLQDAVDVAKRNAEEIEINVNTWLEKAKNEIEGVNHLQNEKGKIGKCFT WCPNPTRQLKLSKALAKKTETLRKLEANSKFPKVSYKPPLQGIEFLPSEELTPSESSKAAFEQIMKALKDDNVNMIGLYGMGGVGKTTLVKEVGRRAKES KLFDEVLMATLSQNPNVIDIQDRMADSLGLHFGEKTKEGRADRLWQRLKTEKKMLIILDDVWKVLNLKEIGIPFGDAHRGCKILLTTRLENICSSMKCQP KVFLSLLSENEAWGLFKINAGLHDEDSTLNTVAKEVARECKGLPIALVTVGRALRDKSAVEWEVASKELKNSQFRHMDELDEQENAYACLKLSYDYLKHE KAKLCFLLCCLFPEDYDIPIEELTRYAVAYGLHQDVESIEDARKRVCATLS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27190			NB-ARC domain-containing disea...		Potri.001G446966 [exp]	0	1
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.016G000400 [exp]	8.48	0.8260	RAB11.7
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Potri.016G049900 [exp]	8.66	0.8496
AT4G09750			NAD(P)-binding Rossmann-fold s...		Potri.002G063601 [exp]	9.16	0.7832
AT1G19010			unknown protein		Potri.017G074300 [exp]	9.64	0.8417
AT5G35910			Polynucleotidyl transferase, r...		Potri.013G062800 [exp]	10.19	0.8338
					Potri.001G426980 [exp]	10.58	0.8351
AT4G27740			Yippee family putative zinc-bi...		Potri.015G009100 [exp]	14.49	0.8291
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.005G143800 [exp]	15.49	0.8057	CYP81S7,CYP81.2
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.001G004700 [exp]	17.94	0.8239
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Potri.008G008476 [exp]	18.00	0.7925

Compare expression of checked genes

Potri.001G446966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.