Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17540 383 / 1e-129 HXXXD-type acyl-transferase family protein (.1) AT3G03480 375 / 1e-126 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G41040 249 / 7e-78 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 236 / 9e-73 HXXXD-type acyl-transferase family protein (.1) AT3G48720 227 / 2e-69 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT1G27620 201 / 1e-59 HXXXD-type acyl-transferase family protein (.1) AT5G48930 180 / 2e-51 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT3G62160 180 / 2e-51 HXXXD-type acyl-transferase family protein (.1) AT1G03390 178 / 2e-50 HXXXD-type acyl-transferase family protein (.1) AT1G28680 177 / 4e-50 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G447300 [exp] 916 / 0 AT5G17540 382 / 2e-129 HXXXD-type acyl-transferase family protein (.1) Potri.001G447500 [exp] 913 / 0 AT5G17540 380 / 2e-128 HXXXD-type acyl-transferase family protein (.1) Potri.011G153500 [exp] 848 / 0 AT5G17540 388 / 1e-131 HXXXD-type acyl-transferase family protein (.1) Potri.001G448000 [exp] 756 / 0 AT5G17540 400 / 4e-136 HXXXD-type acyl-transferase family protein (.1) Potri.001G447900 [exp] 538 / 0 AT3G03480 166 / 2e-48 acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) Potri.013G074500 [exp] 511 / 5e-180 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.019G043600 [exp] 507 / 3e-178 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074400 [exp] 489 / 2e-171 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074300 [exp] 484 / 8e-170 AT5G17540 497 / 7e-175 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020331 [exp] 468 / 8e-163 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10005660 [exp] 420 / 6e-144 AT5G17540 461 / 4e-160 HXXXD-type acyl-transferase family protein (.1) Lus10020332 [exp] 420 / 1e-143 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10020330 [exp] 405 / 3e-138 AT5G17540 436 / 2e-150 HXXXD-type acyl-transferase family protein (.1) Lus10005661 [exp] 398 / 4e-136 AT5G17540 412 / 7e-142 HXXXD-type acyl-transferase family protein (.1) Lus10005659 [exp] 396 / 9e-135 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1) Lus10026872 [exp] 325 / 6e-109 AT5G17540 341 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10005663 [exp] 274 / 1e-89 AT5G17540 295 / 4e-98 HXXXD-type acyl-transferase family protein (.1) Lus10032554 [exp] 263 / 3e-83 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 263 / 5e-83 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.001G447700.1 pacid=42788088 polypeptide=Potri.001G447700.1.p locus=Potri.001G447700 ID=Potri.001G447700.1.v4.1 annot-version=v4.1 ATGGCAACACCAACTTCGATATCGTTCGCAGTCCGAAGGTGCGAACCAGAATTGGTCGCACCAGCTAAGGCCACACCTCATGAATTCAGACAGCTTTCTG ATATTGATCGCCAACTATACCTCCAATTTCAATCACCAGGTTACAACTTGTATGCACACAATCCATCGATGCAAGGGAAAGATCCTGTGAAGGTAATAAA GGAGGCAATTGCGCAGGCACTTGTGTATTATTACCCTTTTGCTGGTAGGATTAGACAAGGGCCAGACAATAAGCTTATAGTTGATTGTACTGGTGAGGGT GTCTTGTTCATCGAAGCTGATGCCGATGCCACGGTCGAGCAGTTTGGTGATCCAATTCCATCTCCATTCCCATGCTTTCAGGAACTTCTTTACAACGTCC CAGGATCAGAAGAGATCCTCAATACCCCATTATTGCTTTTTCAGGTGACACGCTTGAAGTGTGGTGGTTTTGTACTTGGGCTCCGTTTTAATCACCTAAT GAGTGATGGACTCGGCATGCTTCAGTTATTTAATACCATAGGTGAGATGGCACGAGGTGCTCAAACCCCTTCAATTCTACCTGTGTGGCAAAGGGAACTC CTCTGTGCTAGGAATCCGCCACGAGTTACATGCAGACACAATGAATATGGTGATGATGCTCCTGTTGCTGTTGATCCTACAGCCAAGGTGCCTGAATTCC GCGGCGAGGTTCACGCTGTAGCCCACCGTAGTTTTGTTCTTAACCGCAAGGAATTATCCAACATTCGTAGATGGGTTCCTTCTCATTTACACCCATGTTC AGATTTTGAGGTAATAAGTGCATGCTTATGGAGATGCTATGCCATAGCATCTCAAGCTAACCCTAATGAGGAGATGCGCATGCAAATGCTTGTCAACGCA CGTTCCAAATTTAACCCTCCATTACCGAAAGGATATTATGGTAACGTGCTAGCTTTGCCAGCAGCTGTAACAAATGCTAGGAAGCTTTGCTTAAACTCTT TAGGGTATGCATTGGAAATGATAAGAAATGCCAAGAATAGAATAACTGAGGAGTACATGAGATCATTGGCTGATCTGATGGAGATAACCAAAGGGCAGCC TATAGCGTTACAATCATATGTCGTGTCAGACTTAACAAGTTTTGGGTTCGATCAGGTGGACTATGGATGGGGCAACACAATTTACTCTGGGCCACCTAAG GCTATGCCGGATGAAATTTCTATTGCAGGAACCTTTGTCCTGCCGTATCGATTCAAGAACGGAGAGCGTGGGGTTATGGTTTTGGTTTCCTTACGTGCAC CAGTTATGGAGAGATTTGCAATACTATTAGAGGAATTGGCAAGGCATGACCCAGAAAGAAGCCAAGGACAACAAGAAATGATACCAAGCTCCCTATAA
AA sequence Show only first row Show all	>Potri.001G447700.1 pacid=42788088 polypeptide=Potri.001G447700.1.p locus=Potri.001G447700 ID=Potri.001G447700.1.v4.1 annot-version=v4.1 MATPTSISFAVRRCEPELVAPAKATPHEFRQLSDIDRQLYLQFQSPGYNLYAHNPSMQGKDPVKVIKEAIAQALVYYYPFAGRIRQGPDNKLIVDCTGEG VLFIEADADATVEQFGDPIPSPFPCFQELLYNVPGSEEILNTPLLLFQVTRLKCGGFVLGLRFNHLMSDGLGMLQLFNTIGEMARGAQTPSILPVWQREL LCARNPPRVTCRHNEYGDDAPVAVDPTAKVPEFRGEVHAVAHRSFVLNRKELSNIRRWVPSHLHPCSDFEVISACLWRCYAIASQANPNEEMRMQMLVNA RSKFNPPLPKGYYGNVLALPAAVTNARKLCLNSLGYALEMIRNAKNRITEEYMRSLADLMEITKGQPIALQSYVVSDLTSFGFDQVDYGWGNTIYSGPPK AMPDEISIAGTFVLPYRFKNGERGVMVLVSLRAPVMERFAILLEELARHDPERSQGQQEMIPSSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447700 [exp]	0	1
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447766 [exp]	1.00	0.9900
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Potri.002G184500 [exp]	1.41	0.9900
AT3G03480		CHAT	acetyl CoA:(Z)-3-hexen-1-ol ac...		Potri.001G447900 [exp]	1.73	0.9881
AT2G17080			Arabidopsis protein of unknown...		Potri.005G249000 [exp]	8.48	0.9498
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Potri.014G152100 [exp]	10.53	0.9369
AT4G24380			unknown protein		Potri.006G027000 [exp]	12.08	0.9494
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.001G112500 [exp]	14.96	0.9522
AT5G38260			Protein kinase superfamily pro...		Potri.004G096675 [exp]	16.82	0.8221
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Potri.018G033200 [exp]	21.21	0.9607
					Potri.019G075301 [exp]	23.66	0.9609

Compare expression of checked genes

Potri.001G447700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.