Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17540 240 / 8e-78 HXXXD-type acyl-transferase family protein (.1) AT3G03480 210 / 5e-66 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G41040 146 / 2e-41 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 144 / 7e-41 HXXXD-type acyl-transferase family protein (.1) AT3G48720 141 / 6e-40 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT3G62160 118 / 3e-31 HXXXD-type acyl-transferase family protein (.1) AT1G27620 118 / 3e-31 HXXXD-type acyl-transferase family protein (.1) AT5G48930 110 / 2e-28 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT5G57840 110 / 3e-28 HXXXD-type acyl-transferase family protein (.1) AT5G07080 109 / 6e-28 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G447500 [exp] 415 / 3e-146 AT5G17540 380 / 2e-128 HXXXD-type acyl-transferase family protein (.1) Potri.001G447700 [exp] 412 / 3e-145 AT5G17540 383 / 1e-129 HXXXD-type acyl-transferase family protein (.1) Potri.001G447300 [exp] 409 / 8e-144 AT5G17540 382 / 2e-129 HXXXD-type acyl-transferase family protein (.1) Potri.011G153500 [exp] 395 / 2e-138 AT5G17540 388 / 1e-131 HXXXD-type acyl-transferase family protein (.1) Potri.001G448000 [exp] 367 / 2e-127 AT5G17540 400 / 4e-136 HXXXD-type acyl-transferase family protein (.1) Potri.013G074500 [exp] 294 / 8e-99 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074400 [exp] 291 / 2e-97 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.019G043600 [exp] 289 / 8e-97 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074300 [exp] 284 / 6e-95 AT5G17540 497 / 7e-175 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026872 [exp] 270 / 4e-91 AT5G17540 341 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10005663 [exp] 265 / 7e-90 AT5G17540 295 / 4e-98 HXXXD-type acyl-transferase family protein (.1) Lus10020330 [exp] 264 / 7e-87 AT5G17540 436 / 2e-150 HXXXD-type acyl-transferase family protein (.1) Lus10020332 [exp] 261 / 8e-86 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10020331 [exp] 258 / 2e-84 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10005660 [exp] 243 / 1e-78 AT5G17540 461 / 4e-160 HXXXD-type acyl-transferase family protein (.1) Lus10005659 [exp] 234 / 2e-75 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1) Lus10005661 [exp] 206 / 7e-65 AT5G17540 412 / 7e-142 HXXXD-type acyl-transferase family protein (.1) Lus10001341 [exp] 180 / 5e-58 AT5G17540 205 / 5e-65 HXXXD-type acyl-transferase family protein (.1) Lus10032554 [exp] 159 / 2e-46 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.001G447766.1 pacid=42791480 polypeptide=Potri.001G447766.1.p locus=Potri.001G447766 ID=Potri.001G447766.1.v4.1 annot-version=v4.1 ATGGCAGCACCAACTTCGATATCTTTCGCAGTCCGAAGGTGCGAACCAGAATTGGTTGCACCAGCTAAGGCCACACCTCATGAATTCAGACAGCTTTCTG ATATTGATCGCCAACTATACCTCCAATTTCAATCACCAGGTTACAGCTTGTATGCACACAATCCATCGATGCAAGGGAAAGATCCTGTGAAGGTAATAAA GGAGGCAATTGCGCAGGCACTTGTGTATTATTACCCTTTTGCTGGTAGGATTAGACAAGGGCCAGACAATAAGCTTATAGTAGAGTGTACTGGTGAGGGT GTCTTGTTCATCGAAGCCGATGCCGATGCCACGGTTGAGCAGTTTGGTGATCCAATTCCATCTCCATTCCCATGCTTTCAGGAACTTCTTTACAGCGTCC CTGGATCAGAAGAGATCCTCAATACCCCATTATTGCTTTTTCAGGTGACACGCTTGAAGTGTGGTGGTTTTGTACTTGGGTTCCGTTTTAATCACCCAAT GACCGATGCACTCGGCATAGTTCAGCTATTGAATGCCATAGGTGAGATTGCACGAGGTGCTCAATCCCCTTCAATTCTACCTGTGTGGCAAAGGGAACTC CTCTGTGCTAGGAATCCGCCACGAGTTACATGA
AA sequence Show only first row Show all	>Potri.001G447766.1 pacid=42791480 polypeptide=Potri.001G447766.1.p locus=Potri.001G447766 ID=Potri.001G447766.1.v4.1 annot-version=v4.1 MAAPTSISFAVRRCEPELVAPAKATPHEFRQLSDIDRQLYLQFQSPGYSLYAHNPSMQGKDPVKVIKEAIAQALVYYYPFAGRIRQGPDNKLIVECTGEG VLFIEADADATVEQFGDPIPSPFPCFQELLYSVPGSEEILNTPLLLFQVTRLKCGGFVLGFRFNHPMTDALGIVQLLNAIGEIARGAQSPSILPVWQREL LCARNPPRVT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447766 [exp]	0	1
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447700 [exp]	1.00	0.9900
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Potri.002G184500 [exp]	2.00	0.9845
AT3G03480		CHAT	acetyl CoA:(Z)-3-hexen-1-ol ac...		Potri.001G447900 [exp]	3.46	0.9685
AT2G17080			Arabidopsis protein of unknown...		Potri.005G249000 [exp]	14.21	0.9487
					Potri.019G075301 [exp]	19.20	0.9712
AT5G35110			unknown protein		Potri.018G113901 [exp]	24.28	0.9683
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Potri.014G152100 [exp]	24.81	0.9161
AT4G24380			unknown protein		Potri.006G027000 [exp]	25.49	0.9355
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Potri.007G042200 [exp]	27.60	0.9680
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.009G152300 [exp]	29.34	0.9676

Compare expression of checked genes

Potri.001G447766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.