Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03480 118 / 9e-32 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G17540 116 / 7e-31 HXXXD-type acyl-transferase family protein (.1) AT5G41040 91 / 7e-22 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 79 / 1e-17 HXXXD-type acyl-transferase family protein (.1) AT1G27620 79 / 2e-17 HXXXD-type acyl-transferase family protein (.1) AT3G48720 76 / 2e-16 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT2G40230 75 / 3e-16 HXXXD-type acyl-transferase family protein (.1) AT1G28680 73 / 2e-15 HXXXD-type acyl-transferase family protein (.1) AT1G65450 69 / 3e-14 HXXXD-type acyl-transferase family protein (.1.2.3) AT1G03390 67 / 3e-13 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G447700 [exp] 345 / 2e-119 AT5G17540 383 / 1e-129 HXXXD-type acyl-transferase family protein (.1) Potri.001G447500 [exp] 342 / 6e-118 AT5G17540 380 / 2e-128 HXXXD-type acyl-transferase family protein (.1) Potri.001G447300 [exp] 339 / 7e-117 AT5G17540 382 / 2e-129 HXXXD-type acyl-transferase family protein (.1) Potri.011G153500 [exp] 312 / 2e-106 AT5G17540 388 / 1e-131 HXXXD-type acyl-transferase family protein (.1) Potri.001G447900 [exp] 279 / 4e-96 AT3G03480 166 / 2e-48 acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) Potri.001G448000 [exp] 271 / 3e-90 AT5G17540 400 / 4e-136 HXXXD-type acyl-transferase family protein (.1) Potri.019G043600 [exp] 155 / 1e-45 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074500 [exp] 154 / 4e-45 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.019G003000 [exp] 140 / 6e-40 AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020331 [exp] 157 / 4e-46 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10005661 [exp] 147 / 7e-43 AT5G17540 412 / 7e-142 HXXXD-type acyl-transferase family protein (.1) Lus10005660 [exp] 134 / 1e-37 AT5G17540 461 / 4e-160 HXXXD-type acyl-transferase family protein (.1) Lus10005659 [exp] 127 / 4e-35 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1) Lus10020332 [exp] 122 / 4e-33 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10001027 [exp] 118 / 1e-32 AT5G17540 210 / 1e-64 HXXXD-type acyl-transferase family protein (.1) Lus10020330 [exp] 110 / 2e-28 AT5G17540 436 / 2e-150 HXXXD-type acyl-transferase family protein (.1) Lus10035189 [exp] 89 / 5e-21 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2) Lus10032020 [exp] 88 / 1e-20 AT5G41040 443 / 2e-151 HXXXD-type acyl-transferase family protein (.1.2) Lus10012552 [exp] 86 / 7e-20 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.001G447832.1 pacid=42790880 polypeptide=Potri.001G447832.1.p locus=Potri.001G447832 ID=Potri.001G447832.1.v4.1 annot-version=v4.1 ATGCGCATGCAAATGCTTGTCAACGCACGTTCCAAATTTAACCCTCCATTACCGAAAGGATATTATGGTAACGTGCTAGCCTTGCCAGCAGCTGTAACAA ATGCTAGGAAGCTTTGCTTAAACTCTTTAGGGTATGCATTGGAAATGATAAGAAATGCCAAGAATAGAATAACTGAGGAGTACATGAGATCATTGACTGA TCTAATGGAGATAACCAAAGGGCAGCCTATAGCGTTACAATCATATGTCGTGTCAGACTTAACAAGTATGGGGTTGGATCAGGTGGACTATGGATGGGGC AACACAATTTACTCTGGGCCACCTAAGGCTATGCCGGATGAAATTTCTATTGCAGGAACTTATTTCTTGCCCTATCGATTCAAGAACGGAGAGCGTGGGG TTATGGTTTTGGTTTCCTTACGTGCACCAGTTATGGAGAGATTTGCAATACTATTAGAGGAATTGGCGTGGCATGACCCAGAAAGAAGCCAAGGACAACA AGAAATGATACCAAGCTCCCTATAA
AA sequence Show only first row Show all	>Potri.001G447832.1 pacid=42790880 polypeptide=Potri.001G447832.1.p locus=Potri.001G447832 ID=Potri.001G447832.1.v4.1 annot-version=v4.1 MRMQMLVNARSKFNPPLPKGYYGNVLALPAAVTNARKLCLNSLGYALEMIRNAKNRITEEYMRSLTDLMEITKGQPIALQSYVVSDLTSMGLDQVDYGWG NTIYSGPPKAMPDEISIAGTYFLPYRFKNGERGVMVLVSLRAPVMERFAILLEELAWHDPERSQGQQEMIPSSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03480		CHAT	acetyl CoA:(Z)-3-hexen-1-ol ac...		Potri.001G447832 [exp]	0	1
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Potri.016G049400 [exp]	2.44	0.9118	PGIP.3
AT2G25735			unknown protein		Potri.006G244200 [exp]	2.64	0.8846
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.011G153500 [exp]	3.46	0.8913
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Potri.006G152500 [exp]	3.74	0.8209	CKX3.1
AT5G57420	AUX_IAA	IAA33	indole-3-acetic acid inducible...		Potri.006G166900 [exp]	3.87	0.8897
AT1G62500			Bifunctional inhibitor/lipid-t...		Potri.003G111300 [exp]	5.74	0.8396
AT5G61820			unknown protein		Potri.015G108700 [exp]	7.48	0.8704
AT1G62500			Bifunctional inhibitor/lipid-t...		Potri.008G135860 [exp]	8.71	0.7658
AT3G45650		NAXT1	nitrate excretion transporter1...		Potri.008G045100 [exp]	8.83	0.8869
AT1G03230			Eukaryotic aspartyl protease f...		Potri.019G064700 [exp]	11.22	0.8574

Compare expression of checked genes

Potri.001G447832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.