Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32770 295 / 4e-97 NAC NST3, ANAC012, SND1 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) AT2G46770 293 / 1e-96 NAC NST1, ANAC043, EMB2301 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G61910 273 / 7e-89 NAC NST2, ANAC066 NAC SECONDARY WALL THICKENING PROMOTING FACTOR2, NAC domain protein 66 (.1) AT4G10350 246 / 1e-78 NAC BRN2, NST4, ANAC070 BEARSKIN 2, NAC domain containing protein 70 (.1) AT1G79580 244 / 3e-77 NAC ANAC033, SMB, NST6 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT1G33280 239 / 2e-76 NAC BRN1, ANAC015, NST5 BEARSKIN 1, NAC domain containing protein 15 (.1) AT4G36160 226 / 2e-70 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1) AT2G18060 225 / 5e-70 NAC ANAC037, VND1 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) AT1G62700 224 / 2e-69 NAC ANAC026, VND5 VASCULAR RELATED NAC-DOMAIN PROTEIN 5, Arabidopsis NAC domain containing protein 26 (.1) AT1G12260 224 / 3e-69 NAC ANAC007, VND4, EMB2749 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G153300 [exp] 661 / 0 AT2G46770 297 / 4e-98 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.002G178700 [exp] 374 / 5e-128 AT2G46770 366 / 1e-125 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.014G104800 [exp] 374 / 9e-128 AT2G46770 380 / 3e-131 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.010G176600 [exp] 247 / 4e-79 AT1G79580 344 / 8e-118 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.008G080000 [exp] 247 / 4e-79 AT1G79580 333 / 2e-113 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.013G092400 [exp] 242 / 1e-76 AT4G10350 436 / 5e-154 BEARSKIN 2, NAC domain containing protein 70 (.1) Potri.019G066000 [exp] 236 / 3e-74 AT4G10350 451 / 8e-160 BEARSKIN 2, NAC domain containing protein 70 (.1) Potri.001G120000 [exp] 229 / 1e-71 AT1G12260 455 / 1e-160 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.015G127400 [exp] 229 / 2e-71 AT1G12260 378 / 4e-130 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017340 [exp] 338 / 1e-113 AT2G46770 347 / 7e-118 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10001664 [exp] 322 / 5e-107 AT1G32770 343 / 2e-116 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) Lus10033239 [exp] 319 / 7e-106 AT1G32770 318 / 2e-106 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) Lus10002687 [exp] 290 / 4e-94 AT2G46770 358 / 1e-121 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10030205 [exp] 286 / 1e-92 AT2G46770 357 / 5e-121 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10008271 [exp] 261 / 4e-86 AT1G32770 277 / 8e-94 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) Lus10039153 [exp] 252 / 2e-79 AT4G10350 327 / 4e-110 BEARSKIN 2, NAC domain containing protein 70 (.1) Lus10009939 [exp] 243 / 2e-78 AT1G79580 314 / 4e-107 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10013782 [exp] 247 / 3e-78 AT4G10350 325 / 5e-110 BEARSKIN 2, NAC domain containing protein 70 (.1) Lus10032238 [exp] 228 / 2e-70 AT1G12260 432 / 6e-151 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.001G448400.1 pacid=42790025 polypeptide=Potri.001G448400.1.p locus=Potri.001G448400 ID=Potri.001G448400.1.v4.1 annot-version=v4.1 ATGCCTGAGGATATGATGAATCTATCAATAAATGGTCAGTCTCAGGTCCCTCCAGGCTTTAGATTTCACCCAACAGAAGAAGAGCTTCTTCACTACTACC TCAGGAAGAAAGTTGCTAATGAGAAGATAGACCTTGATGTAATTCGCGAGGTTGATCTTAATAAGCTTGAGCCATGGGACATCCAAGAGAAGTGCAAAAT AGGATCTACACCACAGAATGATTGGTATTTCTTTAGTCACAAAGACAAGAAATATCCCACAGGGACTAGAACAAATCGAGCTACGGCTGCTGGGTTTTGG AAAGCCACTGGCCGTGATAAGATCATCTATAGTGGGTTTAAAAGAATTGGATTGAGAAAGACTCTTGTGTTTTACAGAGGAAGAGCTCCACATGGACAGA AATCCGATTGGATCATGCATGAATATAGGCTTGATGACAGCACCAACGACACTAATGTCTCAAATCCTATAGGAGAGGCAATCCCTGAAGAAGGGTGGGT GGTTTGCCGGGTATTTAGAAAGAAGAACTATCAAAAAACCCTTGAGAGTCCCAAAAGCTCATCATGCTCATTGGATTCAAAGGCTCATCAGATTCTTGGT TCAGGAAATGATGGAGTTCTTGATCAAATACTTCTCTATATGGGAAGGACTTGCAAGATGGAGAATGAAACATTTAGCAACATGAATATCTCCAACAACA ACAGTAGTTTAAGGTTTCTCTCAGACAATAGCATCAGTGATGGGCTCCATGAAAGATTCATGCACCTTCCTCGGTTAGACAGCCCACCACTCCCTTCTAT TCCACTAAGCAGTCCATCTTTTGATCAAGATCGAAGTTTCAAATCTTGTTATCACCAATCGTACGATGAGATGCTGACAGAGAATGAACCTTCCTCTTCA AACCAAATTGGCAATGGCACTTTCGACATGATCTCATCATCCGTAATTCATGGCTCCAAATCCGGGCAACTTAACGATTGGGTAACTCTTGATCGTCTAG TGGCATCACAACTTAATGGACATGAAGCAGAGACATCCAAGCATTTATCTTGCTTTACTACCGGCCCAAATGCGAGTTTTGGTCTTTCTCCTGATGATGA CATGCAATTATCACACTTGCAAAATTCTCATAGATCATCATCAAACATTCAAGCAAATACTTCTCATGTGTATACCAACGAGAATGACCTATGGGGCTTC ACTAAATCTTCGTCTCCATCATCATCATCGGACCCATTATGCCACTTATCGGTATAA
AA sequence Show only first row Show all	>Potri.001G448400.1 pacid=42790025 polypeptide=Potri.001G448400.1.p locus=Potri.001G448400 ID=Potri.001G448400.1.v4.1 annot-version=v4.1 MPEDMMNLSINGQSQVPPGFRFHPTEEELLHYYLRKKVANEKIDLDVIREVDLNKLEPWDIQEKCKIGSTPQNDWYFFSHKDKKYPTGTRTNRATAAGFW KATGRDKIIYSGFKRIGLRKTLVFYRGRAPHGQKSDWIMHEYRLDDSTNDTNVSNPIGEAIPEEGWVVCRVFRKKNYQKTLESPKSSSCSLDSKAHQILG SGNDGVLDQILLYMGRTCKMENETFSNMNISNNNSSLRFLSDNSISDGLHERFMHLPRLDSPPLPSIPLSSPSFDQDRSFKSCYHQSYDEMLTENEPSSS NQIGNGTFDMISSSVIHGSKSGQLNDWVTLDRLVASQLNGHEAETSKHLSCFTTGPNASFGLSPDDDMQLSHLQNSHRSSSNIQANTSHVYTNENDLWGF TKSSSPSSSSDPLCHLSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.001G448400 [exp]	0	1
AT1G70985			hydroxyproline-rich glycoprote...		Potri.010G113100 [exp]	1.00	0.8952
					Potri.007G007000 [exp]	2.44	0.8908
AT1G19870		IQD32	IQ-domain 32 (.1)		Potri.002G025200 [exp]	2.82	0.8945
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Potri.011G153300 [exp]	3.87	0.8831
AT2G39050		ArathEULS3	Euonymus lectin S3, hydroxypro...		Potri.019G031500 [exp]	6.00	0.8340
AT2G42880		ATMPK20	MAP kinase 20 (.1)		Potri.005G201800 [exp]	6.24	0.8330
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.014G024700 [exp]	7.93	0.8768
AT1G33800			Protein of unknown function (D...		Potri.013G102200 [exp]	11.83	0.8898
AT1G72160			Sec14p-like phosphatidylinosit...		Potri.013G105900 [exp]	15.16	0.8031
AT1G66810	C3HZnF	AtC3H14	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.017G119900 [exp]	18.81	0.8769

Compare expression of checked genes

Potri.001G448400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.