Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64700 154 / 3e-47 unknown protein AT3G61920 103 / 9e-28 unknown protein AT5G03890 46 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G153000 [exp] 329 / 4e-116 AT1G64700 160 / 1e-49 unknown protein Potri.002G178900 [exp] 177 / 2e-56 AT3G61920 142 / 6e-43 unknown protein Potri.014G104900 [exp] 167 / 2e-52 AT3G61920 130 / 4e-38 unknown protein Potri.001G089000 [exp] 83 / 1e-19 AT3G61920 81 / 5e-19 unknown protein Potri.016G079700 [exp] 54 / 5e-09 AT3G10120 114 / 1e-32 unknown protein Potri.006G213100 [exp] 51 / 5e-08 AT3G10120 122 / 9e-36 unknown protein Potri.008G128700 [exp] 43 / 6e-05 AT2G01340 206 / 3e-67 unknown protein Potri.016G128800 [exp] 42 / 8e-05 AT3G03280 52 / 1e-08 unknown protein Potri.004G088200 [exp] 42 / 9e-05 AT2G01340 179 / 1e-56 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008274 [exp] 153 / 5e-46 AT1G64700 118 / 9e-33 unknown protein Lus10001663 [exp] 149 / 2e-44 AT1G64700 138 / 1e-40 unknown protein Lus10017341 [exp] 67 / 4e-14 AT1G64700 56 / 2e-10 unknown protein Lus10002686 [exp] 52 / 8e-09 AT3G61920 57 / 2e-11 unknown protein Lus10030204 [exp] 54 / 1e-08 AT3G61920 59 / 4e-11 unknown protein Lus10023060 [exp] 46 / 5e-06 AT3G61920 73 / 4e-16 unknown protein Lus10032411 [exp] 45 / 1e-05 AT3G61920 73 / 4e-16 unknown protein Lus10036005 [exp] 45 / 2e-05 AT2G01340 174 / 2e-54 unknown protein Lus10016709 [exp] 44 / 2e-05 AT2G01340 147 / 7e-45 unknown protein Lus10003193 [exp] 42 / 7e-05 AT3G61920 67 / 4e-14 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14009 [poplar] [flax] DUF4228 Domain of unknown function (DUF4228)
Representative CDS sequence Show only first row Show all	>Potri.001G448500.1 pacid=42793235 polypeptide=Potri.001G448500.1.p locus=Potri.001G448500 ID=Potri.001G448500.1.v4.1 annot-version=v4.1 ATGGGAAATTGCATATTTGGAGGCCTAGGAGTGGCAGAAGGAGTGATAAAGGTGATAACATCTAATGGTGGAATCTTAGAGTTTACCACACCAATAACAA CAGGATCCATCACCAACGAGTTTCCAGGCCATGCTATTTTTCCAAGCCATGATCTTTTTTGGAGACCACTTTCTCTACAAGAAGAGCTTCATGGAGGTCA GTCTTACTATTTACTCCCACTCAACAACTCAAAAATTGGTGGCCAAATAGTGAGAGAAGGTCATGTTAGATCAAAAAGTATACCAGCTGCTGCTGCTACA TCAAATATTGTTGCACCTTATAGGATGTCCTTAGATTATCAAGGCATGTTAAAGAGGTCATACACTGAAGTTTTCTCTAGGCACAGCAGCAGCAGCAACA ACAACAAAAATAATTACAACAAAAGTAATGATGGGTTTTGGAAAGTGAAGCTTGTGATTAGTCCAGAGCAGCTAGTAGAGATTTTGTCCGAAGAGGCTAG CACTGAAGAGTTAATTGAGAATGTGAGAGCTGTAGCCAAATGTGGAAATGGGTTCTCATCATCAGCATCTTCTGTTGACTTTTCAGATTCTTGGAGTCTC TCTAGCAGCAGGACTGCTACTTGTAAGAAAGATAGTTTAGTTGATATTTAG
AA sequence Show only first row Show all	>Potri.001G448500.1 pacid=42793235 polypeptide=Potri.001G448500.1.p locus=Potri.001G448500 ID=Potri.001G448500.1.v4.1 annot-version=v4.1 MGNCIFGGLGVAEGVIKVITSNGGILEFTTPITTGSITNEFPGHAIFPSHDLFWRPLSLQEELHGGQSYYLLPLNNSKIGGQIVREGHVRSKSIPAAAAT SNIVAPYRMSLDYQGMLKRSYTEVFSRHSSSSNNNKNNYNKSNDGFWKVKLVISPEQLVEILSEEASTEELIENVRAVAKCGNGFSSSASSVDFSDSWSL SSSRTATCKKDSLVDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64700			unknown protein		Potri.001G448500 [exp]	0	1
AT5G15100		ATPIN8, PIN8	PIN-FORMED 8, Auxin efflux car...		Potri.004G124200 [exp]	10.77	0.8118
AT3G08570			Phototropic-responsive NPH3 fa...		Potri.016G139900 [exp]	13.03	0.7931
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.017G052900 [exp]	14.38	0.7968
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Potri.008G081800 [exp]	18.33	0.7910	APL.2
AT4G15450			Senescence/dehydration-associa...		Potri.006G164748 [exp]	18.60	0.8051
AT1G69510			cAMP-regulated phosphoprotein ...		Potri.010G167000 [exp]	21.07	0.7916
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G006701 [exp]	25.39	0.7818
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.008G166300 [exp]	26.83	0.7885
AT2G14520			CBS domain-containing protein ...		Potri.014G012400 [exp]	29.69	0.7819
AT5G38710			Methylenetetrahydrofolate redu...		Potri.017G109300 [exp]	39.49	0.7510

Compare expression of checked genes

Potri.001G448500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.