Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32790 365 / 4e-126 CID11 CTC-interacting domain 11 (.1.2) AT4G10610 350 / 2e-120 ATRBP37, RBP37, CID12 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) AT3G49390 318 / 2e-107 CID10 CTC-interacting domain 10 (.1.2) AT3G14450 289 / 1e-96 CID9 CTC-interacting domain 9 (.1) AT1G53650 285 / 2e-95 CID8 CTC-interacting domain 8 (.1.2) AT5G24440 243 / 2e-78 CID13 CTC-interacting domain 13 (.1) AT3G23900 50 / 1e-06 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3) AT5G09880 49 / 5e-06 Splicing factor, CC1-like (.1) AT5G10350 46 / 1e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT3G55340 47 / 2e-05 PHIP1 phragmoplastin interacting protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G152700 [exp] 468 / 2e-166 AT4G10610 401 / 5e-140 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) Potri.012G022000 [exp] 338 / 3e-115 AT1G32790 428 / 4e-150 CTC-interacting domain 11 (.1.2) Potri.015G005400 [exp] 335 / 5e-114 AT1G32790 415 / 5e-145 CTC-interacting domain 11 (.1.2) Potri.001G377500 [exp] 288 / 2e-96 AT3G14450 424 / 2e-150 CTC-interacting domain 9 (.1) Potri.011G095800 [exp] 286 / 1e-95 AT3G14450 391 / 3e-137 CTC-interacting domain 9 (.1) Potri.017G058300 [exp] 60 / 1e-09 AT3G23900 447 / 2e-142 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3) Potri.001G319000 [exp] 58 / 4e-09 AT3G23900 386 / 4e-119 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3) Potri.010G209701 [exp] 57 / 7e-09 AT3G55340 265 / 2e-82 phragmoplastin interacting protein 1 (.1) Potri.005G073200 [exp] 52 / 1e-07 AT5G10350 292 / 2e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033242 [exp] 360 / 4e-124 AT1G32790 436 / 1e-153 CTC-interacting domain 11 (.1.2) Lus10008275 [exp] 363 / 6e-124 AT1G32790 437 / 8e-153 CTC-interacting domain 11 (.1.2) Lus10008851 [exp] 332 / 1e-112 AT3G49390 427 / 7e-150 CTC-interacting domain 10 (.1.2) Lus10032942 [exp] 317 / 7e-107 AT3G49390 421 / 2e-147 CTC-interacting domain 10 (.1.2) Lus10032941 [exp] 292 / 1e-97 AT1G32790 383 / 4e-133 CTC-interacting domain 11 (.1.2) Lus10032590 [exp] 57 / 2e-08 AT3G23900 647 / 0.0 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3) Lus10043159 [exp] 56 / 2e-08 AT3G23900 635 / 0.0 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3) Lus10027886 [exp] 54 / 1e-07 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10002835 [exp] 54 / 1e-07 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010042 [exp] 53 / 2e-07 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] PF07145 [poplar] [flax] PAM2 Ataxin-2 C-terminal region
Representative CDS sequence Show only first row Show all	>Potri.001G448800.3 pacid=42790748 polypeptide=Potri.001G448800.3.p locus=Potri.001G448800 ID=Potri.001G448800.3.v4.1 annot-version=v4.1 ATGGCTGTTGGAGAGAATGTTAGTGTTGATTTGGGGAATTTTAGGGCGGAGTCAAGTGTATCATCATCATCAAATGATCAGGATCATCACATCCACAACA ACAATGTTCTGATTCAGCCTCTGTACATGAAGGTTTCCCAGGTGGGCCATCATCAGGCTCCTCCTTATAATCATCATCATCAACAGAGATCAAATGGTGG GGAGAGTTATAAGAGGGAGATTAGAGAGTTGCAGGAGTTATTCTCTAAGTTAAACCCCATGGCTGCTGAGTTTGTGCCTCCTTCACTTTCCAACAACAAT AGTTTCGGTACAGTTAATGGGCTCAATGGAGTTAATGGGGGTTTTTATGGCAACAGCAGCAGCAGCAACAACTTGGTTGTGAATGGAAATGGCTTCGACA GAAATGGACAAGTTAATGGAAATGCTGCTAGAAGAAAGAAAAATTATGGTCAAGTGAAACGTAGAATCAGTAGCAGGACAAGTATGGCTCAACGGGAGGA TACAGTTCGCAGGACTGTGTATGTCTCTGACATCGATCAACAGGTTACTGAAGAGCAACTAGCAGCTCTATTTATTAATTGTGGACAGGTTGTGGACTGT CGTATCTGTGGCGATCCCAATTCTGTACTTCACTTTGCCTTTATTGAGTTCACTGATGAGGAAGGTGCACGGGCTGCCTTGAGCCTGTCTGGGACGATGC TTGGATACTACCCTGTTAAAGTGCTACCCTCCAAAACAGCCATTGCACCAGTTAATCACACCTTTTTGCCCAGGAATGATGATGAGCGTGAAATGTGTGC AAGAACTATCTACTGTACCAATATTGATAGGAATTTTACTCAATCAGATATAAAACTCTTTTTTGAATCACTCTGCGGGGAGGTTTATCGCCTGAGGCTG CTAGGAGATCATCATCATCCAACTCGTATTGCTTTTGTGGAGTTTGTGATGGTAATTGCTTCACTCTTTATTTCTAATGCTGAACTTTCTCTCTCTTTCA ACATCAAACAAATTTAG
AA sequence Show only first row Show all	>Potri.001G448800.3 pacid=42790748 polypeptide=Potri.001G448800.3.p locus=Potri.001G448800 ID=Potri.001G448800.3.v4.1 annot-version=v4.1 MAVGENVSVDLGNFRAESSVSSSSNDQDHHIHNNNVLIQPLYMKVSQVGHHQAPPYNHHHQQRSNGGESYKREIRELQELFSKLNPMAAEFVPPSLSNNN SFGTVNGLNGVNGGFYGNSSSSNNLVVNGNGFDRNGQVNGNAARRKKNYGQVKRRISSRTSMAQREDTVRRTVYVSDIDQQVTEEQLAALFINCGQVVDC RICGDPNSVLHFAFIEFTDEEGARAALSLSGTMLGYYPVKVLPSKTAIAPVNHTFLPRNDDEREMCARTIYCTNIDRNFTQSDIKLFFESLCGEVYRLRL LGDHHHPTRIAFVEFVMVIASLFISNAELSLSFNIKQI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Potri.001G448800 [exp]	0	1
					Potri.007G010000 [exp]	1.00	0.9587
AT1G71840			transducin family protein / WD...		Potri.013G116900 [exp]	2.00	0.9532
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Potri.012G068550 [exp]	3.00	0.9331
AT2G38430			unknown protein		Potri.019G030050 [exp]	3.46	0.9401
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Potri.014G155401 [exp]	4.69	0.9120
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Potri.006G184500 [exp]	4.89	0.9369
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121725 [exp]	6.92	0.9184
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.017G138401 [exp]	7.21	0.9408
AT5G27830			unknown protein		Potri.005G024200 [exp]	8.24	0.8978
AT1G16170			unknown protein		Potri.001G038750 [exp]	10.81	0.9267

Compare expression of checked genes

Potri.001G448800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.