Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10600 199 / 9e-58 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G32810 206 / 3e-54 RING/FYVE/PHD zinc finger superfamily protein (.2) AT1G33420 57 / 6e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G01810 55 / 3e-07 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G66170 53 / 1e-06 MMD1 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G22260 52 / 2e-06 MS1 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G152600 [exp] 1651 / 0 AT1G32810 238 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.2) Potri.004G134700 [exp] 61 / 5e-09 AT1G33420 634 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.013G092000 [exp] 60 / 9e-09 AT1G33420 798 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.T045600 [exp] 59 / 2e-08 AT1G33420 625 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.018G137000 [exp] 59 / 2e-08 AT1G33420 637 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G137200 [exp] 58 / 3e-08 AT2G01810 561 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G101300 [exp] 56 / 2e-07 AT5G22260 649 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.017G135200 [exp] 52 / 3e-06 AT1G66170 728 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017342 [exp] 750 / 0 AT1G32810 320 / 2e-92 RING/FYVE/PHD zinc finger superfamily protein (.2) Lus10001662 [exp] 654 / 0 AT1G32810 261 / 3e-72 RING/FYVE/PHD zinc finger superfamily protein (.2) Lus10039160 [exp] 61 / 7e-09 AT1G33420 746 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013775 [exp] 60 / 1e-08 AT1G33420 650 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10010966 [exp] 52 / 3e-06 AT1G66170 630 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10031357 [exp] 52 / 3e-06 AT1G66170 620 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013251 [exp] 52 / 3e-06 AT5G22260 625 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10030773 [exp] 50 / 1e-05 AT5G22260 626 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G448900.1 pacid=42789136 polypeptide=Potri.001G448900.1.p locus=Potri.001G448900 ID=Potri.001G448900.1.v4.1 annot-version=v4.1 ATGAAGGGGAGCCGATCGCACCGGCTCCAGACCCACCACCAGAATGACCCGCATGAGGACTGGGTGGATGGGTCATGGACAGTAGATTGTGTGTGTGGTG TAAACTTTGATGATGGAGAGGAAATGGTGAATTGTGATGATTGTGGCGTGTGGGTACACACGCGATGTTCAAAGTATGTTAAGGGGGAAGAATTGTTTAC TTGTGATAAATGTAAGAGGAGGAAGAAGGGGGGTAAAAGTAGTAATAATGATGATAGTGATGAGACTGAGGTTGCGCAGTTATTAGTCGAATTGACGACG AAAACGGTTAGTTTAGAGAATGGTGGTGATGGTGGTGGGGGGAATGTGTGTCACCCGAGGAAAGGGTTGAGGTTGTGGACTGAGATTCCGATGGAGGAAA GAGTTCACGTGCAGGGGATTCCGGGTGGGGATCCTGCTTTGTTTAGTGGGTTTTCGAAGGTTTTCACGCCAGAGTTGTGGAAGTGTGCTGGATATGTTCC GAAGAAATTTAGTTTTCAGTACAGGGAGTTTCCGTGTTGGGATGAGAAGGAGAGGAAGGTGGAGAACAGGAGGAGTGAGGAGGAGAATGAGAATATGGTT GATAAGGGTGCAGGGGTTTTGTTTTCTTTGTCGAAGGAGAGCGTGTTTGGGATGCCGGTGGCAGAGTTAGGTGGCATGAGAGAGAGGGATGAGGGTGGTG GTTGTGAAAGGAAGGTGTATTCGAGAGAGATGAAGAAGTGGGAGGGTGAGGATGGAGAAGTTGGGGGTGCTAATTTTGCAGTGCGAAGGGAGAGAAGTGC ACTCAAGCCGGTTGTTGCAAATCCAGGTAAGCGGGGGAAAGAAGATCTTGGGATGTCCATAGATTGGAGTGTAAAGAAGAAGGCTCGAACTGCAGAGAAG GAGATGGAGGCAAAGAAGAGGATTTTTCATGCTTTTAAATCAGCATTTACATCCACCAGTGATGCAAAACCGTTGGAGTTTTATGAAGACAGAGCTCTGA AGTCCTTCAAGAGTGAACTTCAAAGTAATAAGAACAAGAATTTAAAGGACTCTGATATTCAAGAACAGAAGTCAGATAGTTATATAGCAGTAGAAAATGG TGTTGAGAAGCTCAAGAATAACTTGGCAGTGGTTGAGCTGCCCTTGGAAGCACTGTCACCTGACATATCTAGACCTGATTCTTCAACTGGATCTGGATTG AAGGAAGAGAAGTCTAGCCATGAAGTTCTGGTTGCAGTTGAGAGTTCTCCCAAAGAGTTTAATGTATCTTGTGGGAGAATGCCTGTAAAACAAGAGGGCA ATAACATTCTAAGTGGAAATTTAGATGATAAATTGGAGGGTTCCACTGGAAGAGATGTGCCTGCAGTTGGAGACCCAGCTAGGGCTTCACCAGAAGTTAA AGGCAATCAGATTAATGGTAACAGTGATGCAATTCCAAGTTTTGCACAACCTAGTGTTCAAGTAGAAGTGGATGATGACAACTCTAAGGGGGTCTTGAAT TGTCAGTCTCCTCATGGTGATGCAAAAGATGCAAGGATATCTTATGAAAACATATCTGAAAATTCAAAAATGAATGATGCAACATTAGGTGGTTCATCAA ATGACCATAAGGTTCAAGAGGTTGACAGAAATATGGAAGCAGTCCCTCTTTGTCACATGGATAAAGCTAATGAGTTATCTGATGATCCTTGTCAGCATAA ACGAGAATTGGAAAGATCTGAAGGCTCAATGGAAATGCAACAATGTCCTCCAGAACCCAAAAATGGTACAGAGGCTGCTGAAGAACTGTCAAAATCAGGT GAAACTATCTCAAGCACTCCAGCACTACTCAATCACCGTAAAATGGTTGTTTGTGTTGGAAAGTCATCTTCTACTTCATCCACTGTGATGAACTCCAAAA TGCCTGCCTCTGGCAATTTTAGATCTCCAGATACTTTGAATTTTAGTTCTAACACTAAGCAGCAAGTTATACCTGACAGCAGTACTAGCATTAAGAAAGA TCGAGCTACAAGTGAGATAGTGAAAGACGGAGAAAGGCTTGACTTGTCAACAAAAACAGTAAAAGAGTGTCCAAAATCCTCTATGAATTCTGCTTCAAAA TTGTTGCACTCAAGCAAGAGTTCGCATACATCTGTTCCTAAGAGAACCAATTCAGATTCCAAAGATTCCATGCATTACTCGTCCCCTAAAGCATCTTTGG CACAGAATTCTGGTGATACTGTTGGATCACTGCAAATTGAGACAGCTTCACTTGCACAAAATAAGGCAACAGTATCAGGATTACCCCTAAGAGCTGAAAA GCTTAATCAGTCTAATGGCCAGTCATGTTCTAAGACAAGTCATGCATTGTCAACGAATCCTTCCGTTCCTATCAATTCTCCTGCAGCTTTAAGTGATGAA GAGCTTGCTTTGCTTTTACATCAAGAACTCAATAGCTCTCCTAGAGTACCTCGTGTTCCACGTGTTCGCCATGCTGGTGGTTTACCACATTCAGCTTCTC CAACTGCAACAAGTGCGCTGATGAAGCGTGCATCTAGTTCTGGAGCGAAAGATCATAGCTCGGCTTCTAGAAGAAAAGGTAAGGATACATCAAAAGATGG GTTTCGCCGTAATCAGGAGCCTGATGAAGAGGCTAAGAAGACTGACAGACCATCTTCTTCTGATCAGAGGAGGCAAGATACAGGATATAAAGCTGACTCA GTGTCGAAGAGAGGGGATAATGGATCTCCGACAGCAGTACATTCTGTCAAGAACAATATCCCTCCTGCCTCCACCTCAACTGCTAACAGTGGCCCATCTT CCTCTACGGAGGTTAATGACCATCATTTATCATCTAGACGTAATTCACCCAGGAATATTTCTGATGAGGAGACAGGCACTGTTCGGGCTCCTGTTCATCG CACTCTACCAGGGTTAATCAACGAGATCATGAGTAAAGGCAGGCGCATGACATATGTGGAGCTCTGTAATGCTGTTTTACCGCACTGGCATAACTTGAGG AAGCATAATGGAGAACGCTATGCATATTCAAGTCCATCTCAGGCCGTTCTTGATTGCCTGAGGAATCGACAAGAATGGGCTCAATTGGTGGATCGTGGTC CCAAGACAAATTCAAGTAGAAAACGGCGCAAGTTTGATCCTGATGAATCAGAAGATAATGACTATGGCGAGGTAAGAACTACCAAAGGAGGAGAAAGCAA AAGGCTTGAGTCACAAAGAGAAGAGGTTCCCAAGGGCAAGCGAAAAGCAAGGAAACGAAGGCGACTGGCACTGCAAGGAAGAGGTATAAAGGATGTCAGG AAACGGCAGAAGGCAGACATGCTCACTGATGATGATAGTGGCCTATTTTCTAATTCAAGTAACGAGACATTGTTTAGCGAGGACGAGAGTCAAGACAATG GAGCAGGCGTGACTGGAAGTGAGGCCACAGCTAGTTCAGATGATACAGAAACCTCATAG
AA sequence Show only first row Show all	>Potri.001G448900.1 pacid=42789136 polypeptide=Potri.001G448900.1.p locus=Potri.001G448900 ID=Potri.001G448900.1.v4.1 annot-version=v4.1 MKGSRSHRLQTHHQNDPHEDWVDGSWTVDCVCGVNFDDGEEMVNCDDCGVWVHTRCSKYVKGEELFTCDKCKRRKKGGKSSNNDDSDETEVAQLLVELTT KTVSLENGGDGGGGNVCHPRKGLRLWTEIPMEERVHVQGIPGGDPALFSGFSKVFTPELWKCAGYVPKKFSFQYREFPCWDEKERKVENRRSEEENENMV DKGAGVLFSLSKESVFGMPVAELGGMRERDEGGGCERKVYSREMKKWEGEDGEVGGANFAVRRERSALKPVVANPGKRGKEDLGMSIDWSVKKKARTAEK EMEAKKRIFHAFKSAFTSTSDAKPLEFYEDRALKSFKSELQSNKNKNLKDSDIQEQKSDSYIAVENGVEKLKNNLAVVELPLEALSPDISRPDSSTGSGL KEEKSSHEVLVAVESSPKEFNVSCGRMPVKQEGNNILSGNLDDKLEGSTGRDVPAVGDPARASPEVKGNQINGNSDAIPSFAQPSVQVEVDDDNSKGVLN CQSPHGDAKDARISYENISENSKMNDATLGGSSNDHKVQEVDRNMEAVPLCHMDKANELSDDPCQHKRELERSEGSMEMQQCPPEPKNGTEAAEELSKSG ETISSTPALLNHRKMVVCVGKSSSTSSTVMNSKMPASGNFRSPDTLNFSSNTKQQVIPDSSTSIKKDRATSEIVKDGERLDLSTKTVKECPKSSMNSASK LLHSSKSSHTSVPKRTNSDSKDSMHYSSPKASLAQNSGDTVGSLQIETASLAQNKATVSGLPLRAEKLNQSNGQSCSKTSHALSTNPSVPINSPAALSDE ELALLLHQELNSSPRVPRVPRVRHAGGLPHSASPTATSALMKRASSSGAKDHSSASRRKGKDTSKDGFRRNQEPDEEAKKTDRPSSSDQRRQDTGYKADS VSKRGDNGSPTAVHSVKNNIPPASTSTANSGPSSSTEVNDHHLSSRRNSPRNISDEETGTVRAPVHRTLPGLINEIMSKGRRMTYVELCNAVLPHWHNLR KHNGERYAYSSPSQAVLDCLRNRQEWAQLVDRGPKTNSSRKRRKFDPDESEDNDYGEVRTTKGGESKRLESQREEVPKGKRKARKRRRLALQGRGIKDVR KRQKADMLTDDDSGLFSNSSNETLFSEDESQDNGAGVTGSEATASSDDTETS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10600			RING/FYVE/PHD zinc finger supe...		Potri.001G448900 [exp]	0	1
AT1G68720		ATTADA, TADA	ARABIDOPSIS THALIANA TRNA ADEN...		Potri.008G111100 [exp]	1.00	0.8969
AT5G08450			unknown protein		Potri.018G145560 [exp]	2.44	0.8596
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Potri.014G013100 [exp]	4.69	0.8766
AT3G49601			unknown protein		Potri.006G233000 [exp]	8.06	0.8489
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.007G014100 [exp]	9.89	0.8360
AT5G55660			DEK domain-containing chromati...		Potri.001G367400 [exp]	10.58	0.8585
AT2G44430			DNA-binding bromodomain-contai...		Potri.001G229300 [exp]	12.12	0.7623
					Potri.008G016200 [exp]	12.72	0.8368
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.009G131200 [exp]	12.96	0.8336
AT5G08450			unknown protein		Potri.004G135800 [exp]	15.00	0.8329

Compare expression of checked genes

Potri.001G448900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.