Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32860 483 / 4e-170 Glycosyl hydrolase superfamily protein (.1) AT5G42100 472 / 1e-165 ATBG_PPAP, ATBG_PAP ARABIDOPSIS THALIANA BETA-1,3-GLUCANASE_PUTATIVE, beta-1,3-glucanase_putative (.1.2) AT2G27500 412 / 5e-143 Glycosyl hydrolase superfamily protein (.1.2.3) AT1G30080 357 / 1e-120 Glycosyl hydrolase superfamily protein (.1) AT4G18340 353 / 3e-119 Glycosyl hydrolase superfamily protein (.1) AT3G15800 335 / 2e-112 Glycosyl hydrolase superfamily protein (.1) AT2G26600 328 / 8e-110 Glycosyl hydrolase superfamily protein (.1.2) AT5G55180 303 / 8e-99 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G05790 301 / 3e-98 O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 293 / 2e-95 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G152400 [exp] 644 / 0 AT1G32860 502 / 8e-178 Glycosyl hydrolase superfamily protein (.1) Potri.009G163700 [exp] 421 / 4e-146 AT2G27500 499 / 1e-177 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G202400 [exp] 415 / 8e-144 AT2G27500 540 / 0.0 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G097400 [exp] 377 / 5e-129 AT2G27500 462 / 3e-163 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.011G084900 [exp] 367 / 5e-125 AT1G30080 538 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.004G132700 [exp] 357 / 9e-121 AT1G30080 525 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.003G032600 [exp] 354 / 6e-120 AT3G15800 524 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.001G192200 [exp] 339 / 4e-113 AT3G15800 514 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.018G129500 [exp] 325 / 1e-108 AT2G26600 543 / 0.0 Glycosyl hydrolase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033244 [exp] 509 / 3e-180 AT1G32860 483 / 5e-170 Glycosyl hydrolase superfamily protein (.1) Lus10008277 [exp] 508 / 5e-180 AT1G32860 483 / 6e-170 Glycosyl hydrolase superfamily protein (.1) Lus10001660 [exp] 498 / 8e-177 AT1G32860 462 / 8e-163 Glycosyl hydrolase superfamily protein (.1) Lus10017344 [exp] 492 / 3e-174 AT1G32860 459 / 5e-161 Glycosyl hydrolase superfamily protein (.1) Lus10004869 [exp] 421 / 4e-146 AT2G27500 491 / 5e-174 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10020618 [exp] 419 / 6e-145 AT2G27500 494 / 5e-175 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10028122 [exp] 367 / 1e-124 AT4G18340 513 / 0.0 Glycosyl hydrolase superfamily protein (.1) Lus10038501 [exp] 358 / 4e-122 AT4G18340 484 / 6e-172 Glycosyl hydrolase superfamily protein (.1) Lus10023309 [exp] 355 / 5e-120 AT4G18340 483 / 2e-170 Glycosyl hydrolase superfamily protein (.1) Lus10042825 [exp] 349 / 2e-118 AT4G18340 479 / 1e-170 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Potri.001G449100.6 pacid=42790783 polypeptide=Potri.001G449100.6.p locus=Potri.001G449100 ID=Potri.001G449100.6.v4.1 annot-version=v4.1 ATGGAGCACAGTAGATTCTACTACCATGTTTCACTCATCCTTTCCATTTCAGGTTTGGTGTTTCCTGTCATGGTGGGTTCTATTGGGATAAATTATGGTC AGATTGCAAACAACCTTCCAACACCAGACAATGTAATCCCTTTAGTGAAATCAATTGGGGCAACAAAAGTGAAACTTTACGATGCAGATCCAAGAGTGCT TAAAGCATTTGCTAATACAGGGGTGGAATTCATAGTTGGTCTTGGAAATGAGTATTTGTCAAAGATGAGAGATCCAGATAAAGCACAAGCTTGGGTAAAA GCAAATGTTCAAGCTTATTTACCAGCTACAAAAATCACTTGCATCACCATTGGTAATGAAATCTTAACCTTGAATGACACAAGTCTAACAGACAATCTCC TTCCTGCAATGCAAGGCATTCAGACAGCTTTAGTGAATTTGGGACTTGATAAGCAAGTCTCGGTTACTACTGCTCATTCTTTGGCAGTTCTTGATGTGTC ATTTCCACCTTCAGCTGGATCTTTTCGAAAAGATCTAGTGGGGAGCATCACCCCCATATTGAATTTCCATGCCAAGACTAATTCACCATTTTTAATCAAT GCGTATCCCTTTTTCGCATTCAAGTCTAACCCCAAACAAGTTTCTTTAGATTTTGTGTTGTTTCAGCCAAATCAAGGGGTTGTTGATCCGAAAAGCAACT TCCATTATGATAATATGCTGTTTGCTCAAATTGATGCTGTGTATTCTGCATTAGCAAGTTTAGGATACAGTAAATTGCCAGTTCACATATCAGAAACTGG CTGGCCATCAAAAGGTGATGAAGATGAAGTAGGAGCAACCCTCGAAAATGCTAAGAAATATAACGGGAACTTGTTTAAGACAATTTGTCAAAGGAAGGGA ACCCCAATGAGGCCTAATACAGATTTGAACATTTATGTTTTTGCTTTGTTTAATGAAAACATGAAGCCTGGACCAACTTCTGAGAGGAATTATGGGTTGT TTAAGCCTGATGGATCGCCAGCTTATCTGCTTGGAATTAATGGAACTGATGCTATTAGCACTAACTCCACCCCCACCACTGCCGCCACCACCACCACCAC TCCTGCACCGCGCTCGCCGGAGAGTTCTTCAACTGGGTATTTGTCAATTTCTGCTGCTGTAAAGGTAATGTTCTGGACTTCATGGTGGTGCTTTTACTTT CGGTTCTTTTGTTGTTGTTTTGTGTACCTAACTTGGGAAAGTGTTGTCGTTTGTGGCATGATTTGA
AA sequence Show only first row Show all	>Potri.001G449100.6 pacid=42790783 polypeptide=Potri.001G449100.6.p locus=Potri.001G449100 ID=Potri.001G449100.6.v4.1 annot-version=v4.1 MEHSRFYYHVSLILSISGLVFPVMVGSIGINYGQIANNLPTPDNVIPLVKSIGATKVKLYDADPRVLKAFANTGVEFIVGLGNEYLSKMRDPDKAQAWVK ANVQAYLPATKITCITIGNEILTLNDTSLTDNLLPAMQGIQTALVNLGLDKQVSVTTAHSLAVLDVSFPPSAGSFRKDLVGSITPILNFHAKTNSPFLIN AYPFFAFKSNPKQVSLDFVLFQPNQGVVDPKSNFHYDNMLFAQIDAVYSALASLGYSKLPVHISETGWPSKGDEDEVGATLENAKKYNGNLFKTICQRKG TPMRPNTDLNIYVFALFNENMKPGPTSERNYGLFKPDGSPAYLLGINGTDAISTNSTPTTAATTTTTPAPRSPESSSTGYLSISAAVKVMFWTSWWCFYF RFFCCCFVYLTWESVVVCGMI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32860			Glycosyl hydrolase superfamily...		Potri.001G449100 [exp]	0	1
AT3G56370			Leucine-rich repeat protein ki...		Potri.016G137000 [exp]	2.82	0.9291
AT5G66920		SKS17	SKU5 similar 17 (.1)		Potri.007G038300 [exp]	3.16	0.9418
AT1G09540	MYB	AtMYB61	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.013G001000 [exp]	4.24	0.9290
AT4G02010			Protein kinase superfamily pro...		Potri.002G194700 [exp]	5.47	0.9201
AT4G02010			Protein kinase superfamily pro...		Potri.002G194850 [exp]	10.48	0.9144
AT1G09540	MYB	AtMYB61	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.005G001600 [exp]	10.58	0.9105	MYB61.2
AT5G59840			Ras-related small GTP-binding ...		Potri.001G236100 [exp]	10.58	0.9164	Pt-RAB8.2
AT3G44610			Protein kinase superfamily pro...		Potri.010G236200 [exp]	11.48	0.9213
AT5G01890			Leucine-rich receptor-like pro...		Potri.006G108600 [exp]	12.00	0.9188
AT1G62981			Protein of unknown function (D...		Potri.001G112800 [exp]	12.40	0.9187

Compare expression of checked genes

Potri.001G449100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.