Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32180 476 / 3e-161 ATCSLD6 CELLULOSE SYNTHASE LIKE D6, cellulose synthase-like D6 (.1) AT3G03050 480 / 7e-161 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) AT5G16910 474 / 1e-158 ATCSLD2 cellulose-synthase like D2 (.1) AT4G38190 470 / 1e-157 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) AT1G02730 457 / 6e-152 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) AT2G33100 446 / 8e-149 ATCSLD1 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) AT5G09870 324 / 3e-102 CESA5 cellulose synthase 5 (.1) AT5G64740 321 / 6e-101 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT5G05170 320 / 1e-100 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT4G39350 320 / 2e-100 ATH-A, CESA2, ATCESA2 cellulose synthase A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G049700 [exp] 502 / 2e-169 AT3G03050 2020 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.013G082200 [exp] 501 / 5e-169 AT3G03050 1987 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.003G097100 [exp] 496 / 9e-168 AT3G03050 1610 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.001G136200 [exp] 494 / 5e-167 AT3G03050 1640 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.009G170000 [exp] 476 / 2e-159 AT4G38190 1873 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.004G208800 [exp] 468 / 1e-156 AT4G38190 1835 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.001G050200 [exp] 451 / 1e-150 AT2G33100 1576 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Potri.014G125100 [exp] 451 / 9e-150 AT1G02730 1820 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.002G200300 [exp] 451 / 1e-149 AT1G02730 1813 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030453 [exp] 499 / 2e-171 AT3G03050 1584 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10009248 [exp] 484 / 6e-163 AT3G03050 1929 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10038008 [exp] 483 / 1e-162 AT3G03050 1818 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10002134 [exp] 479 / 4e-161 AT3G03050 1473 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10025046 [exp] 476 / 6e-160 AT1G02730 1540 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Lus10013851 [exp] 476 / 2e-159 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10022982 [exp] 474 / 1e-158 AT4G38190 1823 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10010024 [exp] 472 / 1e-157 AT1G02730 1806 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Lus10026568 [exp] 471 / 3e-157 AT4G38190 1868 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10012119 [exp] 436 / 8e-145 AT5G16910 1285 / 0.0 cellulose-synthase like D2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03552 [poplar] [flax] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Potri.001G449301.1 pacid=42790259 polypeptide=Potri.001G449301.1.p locus=Potri.001G449301 ID=Potri.001G449301.1.v4.1 annot-version=v4.1 ATGGTGTCTCTTGGATTGTTTTTGGGGTGGAGGATCAACCACCCAAATGATGATGCAATTTGGATGTATAATATGTCTATCATCTGTGAAACCTGGTTTG CTTTCACTTGGTTACTTGACCAGCTTCCCAAGCTCTTTCCTGTTAATCGGTCAGCTAATCTTGAAGTCTTGAAGAAATCTGATCTTCCAGGGATTGATGT CTTTGTTTCTACTGCAGATCCTGAGAAAGAACCACCTCTTGTTACTGCAAACACTATCTTATCCATTCTTGCAGCTGATTACCCTGTACAGAAACTTTCT TGTTACATTTCTGATGATGGAGGTGCCCTTCTAACCTTTGAGGCTATGGCCAGAGCAGCGAAATTTGAGAAAATGTGGGTCCCTTTTTGCCGGAAACATG ATATCTGTCCAAGGAACCCTGAATCTTACTTCAACATGAAGCGAGAAACTTGTAAGACTAAGCTGCGTCAAGATTTCGTAAGGGAGCACAGGCACATGAA GCGAGAGTACGATGAGTTCAAAATTCAGATCAATGCCCTTCCTTACATAATTCAGCGACGTTCTGATGTCTGTAATTCTGAGGAGGAGAGCAGTTGCATC AGGCATTATAAAGAGAGCGAAATGGAAAGTTTGGCGTTATCTGAGAAGGTTACTTGGATGGTGGTTGATGAAGCGATTTTGTCCCCGTGGCCAGGAACTT CGGTGGTTTCCGCACCTGAGCATTCTAGAGGAGATCATGCCAGTATCATACAAGTGTTGTTAGAACCCCCAGCAGTTAAACTAGAACAAGGAACTGCTAC TGATTTTGATAATCTGTTTGATTTTAGTGAAGTGGATTCTCGTCTTCCTATGCTAGTTTATGTATCCCGTGAAAAGCGTCTTGGCTATGATCACAACAAG AAGGCTGGGGCCATGAATGCCCTACTTCGAGCTTCGGCCATCATAACCAACGGGTCCTTCATTCTTAACCTTGACTGTGACCACTACATCTATAATCCCC AAGCTATGAAAGAAGGAATATGTTTCATGATGGATAGTGGAGGTGACAGAATTTGTTATGTCCAGTTTCCTTAG
AA sequence Show only first row Show all	>Potri.001G449301.1 pacid=42790259 polypeptide=Potri.001G449301.1.p locus=Potri.001G449301 ID=Potri.001G449301.1.v4.1 annot-version=v4.1 MVSLGLFLGWRINHPNDDAIWMYNMSIICETWFAFTWLLDQLPKLFPVNRSANLEVLKKSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVQKLS CYISDDGGALLTFEAMARAAKFEKMWVPFCRKHDICPRNPESYFNMKRETCKTKLRQDFVREHRHMKREYDEFKIQINALPYIIQRRSDVCNSEEESSCI RHYKESEMESLALSEKVTWMVVDEAILSPWPGTSVVSAPEHSRGDHASIIQVLLEPPAVKLEQGTATDFDNLFDFSEVDSRLPMLVYVSREKRLGYDHNK KAGAMNALLRASAIITNGSFILNLDCDHYIYNPQAMKEGICFMMDSGGDRICYVQFP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.001G449301 [exp]	0	1
AT5G11650			alpha/beta-Hydrolases superfam...		Potri.006G237200 [exp]	3.31	0.7211
AT5G38760			Late embryogenesis abundant pr...		Potri.017G108500 [exp]	17.14	0.7809	LEA1.6
AT1G64320			myosin heavy chain-related (.1...		Potri.003G137300 [exp]	18.52	0.7355
					Potri.006G083850 [exp]	20.68	0.7444
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Potri.017G125600 [exp]	20.92	0.7368
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Potri.010G166200 [exp]	26.94	0.7684
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.018G094800 [exp]	29.39	0.7247
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Potri.014G091800 [exp]	32.63	0.7386
					Potri.016G065850 [exp]	37.29	0.7117
					Potri.003G189601 [exp]	46.01	0.6868

Compare expression of checked genes

Potri.001G449301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.