Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GBSSI.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32900 923 / 0 GBSS1 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) AT3G01180 343 / 5e-108 ATSS2 starch synthase 2 (.1) AT5G24300 318 / 2e-99 SSI1, SSI, ATSS1 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) AT4G18240 171 / 1e-44 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) AT1G11720 159 / 2e-40 ATSS3 starch synthase 3 (.1.2) AT5G01220 44 / 0.0002 SQD2 sulfoquinovosyldiacylglycerol 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G152200 [exp] 1069 / 0 AT1G32900 880 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.017G084100 [exp] 338 / 4e-106 AT3G01180 985 / 0.0 starch synthase 2 (.1) Potri.015G012400 [exp] 333 / 1e-105 AT5G24300 904 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Potri.001G351800 [exp] 165 / 1e-42 AT4G18240 1293 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.004G014100 [exp] 155 / 2e-39 AT1G11720 1460 / 0.0 starch synthase 3 (.1.2) Potri.018G149500 [exp] 133 / 1e-32 AT4G18240 449 / 4e-146 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.007G009600 [exp] 61 / 3e-09 AT5G65685 507 / 2e-174 UDP-Glycosyltransferase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008279 [exp] 879 / 0 AT1G32900 883 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10033245 [exp] 878 / 0 AT1G32900 885 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10033014 [exp] 347 / 1e-109 AT3G01180 973 / 0.0 starch synthase 2 (.1) Lus10022398 [exp] 331 / 1e-104 AT5G24300 874 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10015371 [exp] 330 / 4e-103 AT3G01180 928 / 0.0 starch synthase 2 (.1) Lus10018116 [exp] 328 / 5e-103 AT5G24300 855 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10038491 [exp] 170 / 5e-44 AT4G18240 1278 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10023319 [exp] 167 / 3e-43 AT4G18240 1303 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10042837 [exp] 162 / 2e-41 AT4G18240 1281 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10028133 [exp] 160 / 5e-41 AT4G18240 1285 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00534 [poplar] [flax] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [poplar] [flax] GT-B PF08323 [poplar] [flax] Glyco_transf_5 Starch synthase catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.001G449500.15 pacid=42790765 polypeptide=Potri.001G449467.1.p locus=Potri.001G449500 ID=Potri.001G449500.15.v4.1 annot-version=v4.1 ATGGTTTCAAAACAAAATCAAAGTCTAGAGATTTTCTTGCTAGTTTGTTATTGTTTGATTCACAAAGAGCAAGAGAGAACCATGGCAAGCCTGACTGCTT CACACTTTGCGCCAAGGAACTCATCTGTGAGCAGCCATGGATCAGAAACAACGGAAAATTTTGGTCAAATTGGGTTAAGGAGCCAAAGCATGACTCACAG TGGTTTAAGGTCACTGAACATGGTGGACAAGCTGCAATTTAAGACTCAAGCATTTGCAAGGAAGTCTGTCAAAAAGGCCTATGCTACTGGGAATGACACT TCTGGAAAAATTGTTTGTCTACAAGGAGGAATGACTGTGGTCTTTGTTGCCACTGAGGTAGCTCCTTGGAGCAAAACTGGTGGTCTTGGTGATGTTCTTG GTGGACTTCCCCCAGCAATGGCTGCAAGAGGCCACCGGGTTATGACAATCTCTCCACGATTTGACCAGTACAAAGATGCTTGGGACACTTGTGAAGTGGC GCAGATTCTAGTTGGAGACACAGTTGAAACTGTTCGGTACTTCCACTGCTACAAGCGTGGAGTTGATCGCGTGTTTGTGGATCATCCCATGTTCCTAGAG AAGGTTTGGGGCAAAACTGGATCCAAAATCTATGGTCCTGCAGCTGGAGAGGATTTCCAGGATAATCAACTGCGGTTCAGCTTGTTCTGCCTGGCTGCTC TTGAAGCACCAAGGGTTCTGAGCTTGAACAGCAGCAAACATTTCTCTGGACCATATGGAGAGGATGTTGTCTTTGTTGCCAATGATTGGCACACTGGTCT CCTCCCATGTTACTTGAAATCAATGTACCAATCCAGGGGAATTTACATGACTGCAAAGGTTGCCTTTTGCATCCATAACATTGCTTACCAGGGCAGATTT TCCTTCTCAGATTTCCCACTCCTAAATTTGCCAGATGAGTACAAGAGCTCTTTTGACTTCATGGATGGGTATAACAAGCCTGTGAAGGGAAGGAAAATCA ATTGGTTGAAGGCTGGTATATTGGAAGCACACAGAGTTTTGACTGTAAGCCCTTACTATGCCCAGGAACTTGTTTCTGGAGTTGACAAGGGTGTGGAATT GGATAACTACCTCCGTACAACTGGCATTACTGGGATAGTAAATGGTATGGATGTTCAAGAATGGAATCCTGCAACAGATAAATACCTAAGCACCAAATAT GAGATCACAACTGTCTTATCTGCAAAGCCATTATTGAAGGAAGAACTTCAAGCAGAAGTTGGATTGCCTGTTGACAGAGATATTCCTGTAATAGGCTTTA TTGGTAGACTGGAAGAGCAAAAAGGTTCAGATATTCTTGCTGCTGCCATTCCAATGCTGGTTAAAAACAATGTGCAGATAATAGTCCTTGGTACTGGCAA AAAATACATGGAAAAACAGATTGCCGAGCTTGAGAAAAAGTATCCTGATAAGGTCAGAGGAGTGGCAAAGTTCAATGTCCCCCTGGCCCATATGATCATT GCTGGTGCTGACTTTATGATGATCCCCAGTAGATTTGAACCTTGTGGTCTCATTCAGTTGCATGCTATGCGATACGGAACAGTATGCATTGTTTCCTCCA CTGGTGGACTTGTTGACACTGTCAAAGAAGGTTACACAGGATTCCATATGGGAGCCTTCAATGTTGAGTGTGATGTGGTTGATCAAGCAGATGTGGCTGC AATTGTTAAGACTGCCGGAAGAGCTCTTGCAGTCTACGGCACTACTGCCTTCAAAGAAATGATCAAGAATTGCATGTCCCAAGATCTTTCATGGAAGGGA CCAGCCAGACTCTGGGAGAAGATTCTGTTAAACCTAAATGTTACCGGCAGCAAAGCTGGAACCGAAGGAGAGGAGATTGCTCCACTTGCCAAGGAGAATG TCGCCACTCCTTGA
AA sequence Show only first row Show all	>Potri.001G449500.15 pacid=42790765 polypeptide=Potri.001G449467.1.p locus=Potri.001G449500 ID=Potri.001G449500.15.v4.1 annot-version=v4.1 MVSKQNQSLEIFLLVCYCLIHKEQERTMASLTASHFAPRNSSVSSHGSETTENFGQIGLRSQSMTHSGLRSLNMVDKLQFKTQAFARKSVKKAYATGNDT SGKIVCLQGGMTVVFVATEVAPWSKTGGLGDVLGGLPPAMAARGHRVMTISPRFDQYKDAWDTCEVAQILVGDTVETVRYFHCYKRGVDRVFVDHPMFLE KVWGKTGSKIYGPAAGEDFQDNQLRFSLFCLAALEAPRVLSLNSSKHFSGPYGEDVVFVANDWHTGLLPCYLKSMYQSRGIYMTAKVAFCIHNIAYQGRF SFSDFPLLNLPDEYKSSFDFMDGYNKPVKGRKINWLKAGILEAHRVLTVSPYYAQELVSGVDKGVELDNYLRTTGITGIVNGMDVQEWNPATDKYLSTKY EITTVLSAKPLLKEELQAEVGLPVDRDIPVIGFIGRLEEQKGSDILAAAIPMLVKNNVQIIVLGTGKKYMEKQIAELEKKYPDKVRGVAKFNVPLAHMII AGADFMMIPSRFEPCGLIQLHAMRYGTVCIVSSTGGLVDTVKEGYTGFHMGAFNVECDVVDQADVAAIVKTAGRALAVYGTTAFKEMIKNCMSQDLSWKG PARLWEKILLNLNVTGSKAGTEGEEIAPLAKENVATP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32900		GBSS1	granule bound starch synthase ...		Potri.001G449500 [exp]	0	1	Pt-GBSSI.3
AT2G19130			S-locus lectin protein kinase ...		Potri.013G095800 [exp]	3.16	0.9072
AT2G29670			Tetratricopeptide repeat (TPR)...		Potri.009G044200 [exp]	6.63	0.8651
AT4G16990		RLM3	RESISTANCE TO LEPTOSPHAERIA MA...		Potri.005G062700 [exp]	10.67	0.8909
AT1G34300			lectin protein kinase family p...		Potri.013G096300 [exp]	11.95	0.8629
AT5G24470		APRR5	pseudo-response regulator 5 (....		Potri.002G179800 [exp]	20.24	0.8755
AT5G65620			Zincin-like metalloproteases f...		Potri.009G151300 [exp]	20.49	0.8768
AT2G19130			S-locus lectin protein kinase ...		Potri.013G096000 [exp]	23.62	0.8664
AT3G52740			unknown protein		Potri.009G163900 [exp]	28.00	0.8706
AT1G02630			Nucleoside transporter family ...		Potri.006G068100 [exp]	32.31	0.8464
AT1G06210			ENTH/VHS/GAT family protein (....		Potri.005G225000 [exp]	34.59	0.8529

Compare expression of checked genes

Potri.001G449500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.