Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64720 489 / 5e-173 CP5 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT5G54170 399 / 3e-136 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT4G14500 370 / 2e-125 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT3G23080 352 / 5e-119 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT3G13062 157 / 2e-43 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) AT1G55960 138 / 2e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G151500 [exp] 706 / 0 AT1G64720 515 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.015G005000 [exp] 496 / 2e-174 AT1G64720 474 / 1e-166 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.012G021400 [exp] 489 / 5e-172 AT1G64720 478 / 2e-168 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.010G076500 [exp] 348 / 8e-117 AT4G14500 571 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.008G162600 [exp] 343 / 1e-114 AT4G14500 581 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.007G002700 [exp] 124 / 3e-31 AT3G13062 390 / 5e-134 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) Potri.014G001100 [exp] 124 / 3e-31 AT3G13062 416 / 3e-144 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033247 [exp] 551 / 0 AT1G64720 523 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10032938 [exp] 417 / 9e-144 AT1G64720 437 / 2e-152 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10008281 [exp] 393 / 4e-137 AT1G64720 374 / 1e-130 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10041166 [exp] 355 / 4e-119 AT4G14500 607 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10021883 [exp] 340 / 1e-113 AT4G14500 605 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10033334 [exp] 130 / 1e-33 AT1G55960 384 / 5e-132 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10000083 [exp] 108 / 3e-27 AT3G23080 122 / 6e-33 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10034791 [exp] 110 / 5e-26 AT3G13062 346 / 2e-115 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) Lus10015566 [exp] 102 / 3e-25 AT1G64720 105 / 5e-27 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [poplar] [flax] Bet_v_1_like PF01852 [poplar] [flax] START START domain
Representative CDS sequence Show only first row Show all	>Potri.001G450100.1 pacid=42788605 polypeptide=Potri.001G450100.1.p locus=Potri.001G450100 ID=Potri.001G450100.1.v4.1 annot-version=v4.1 ATGGCTTTAGGTTCAGTTTTATTGGAGATTTTGCAAAGACCTACAATTGGGGAAGTGTTGAGTGAGATTTTGATTTTTGTGATTCCTTTGTGGGTTGCTG TTGCTGTTGGGGTTCTTGTGGGGTGGGCATGGAAGCCTAAATGGGCTAGTAATTTGAGTAGAGAAATGTTGTTGGATTCCAAGGTTTCAAAGGAGGCTAA AAAAGAAGGAGAATTTTCAGCAACAACAAGAAGTTCTGTGATTCCAAGTTTCAATATTTTGAAGTTTCAGTTGCCAAGTTGTGTTTCTTGGGTTGCTGAT GATGGAGGGTTTCAAAAGGACTCTCTCTCTGTGCCACCTACCCTCAATTCTGAATGCAGTTCATCAAAAATGAAAAAGGAAAAACCAGATCTTGTGATGG AAGATGATTTGGAGCATTTGAGTAAGCTGGTGGAAGTGACAGATGGAGGTCCTGCTTGGATTCAAATGATGGATCGTTCAACACCTACTATGAGCTATCA AGCTTGGCGCAGAGATCCTGAGACTGGCCCTCCACAATATCGTAGCAGAACTGTTTACGAGGATGTCACACCTGAACTGATGAGGGACTTCTTTTGGGAT GATGAATTTCGAGCAAAGTGGGACGACATGCTTTTACACGCTGAAACTTTGGAGGATTGCCCTACCACAGGAACCATGTTGGTCCAGTGGGTGCGCAAGT TTCCTTTCTTTTGTAGTGACAGAGAATACATCATAGGCCGTCGAATTTGGGAGTCAGGTCGAATGTACTACTGTGTTACAAAGGGAGTTCCTTGCTCCTC TGTGCCAAGGCGCAACAAACCAAGGCGTGTTGATTTGTACTATTCAAGCTGGTGCATTCGTGCAGTTGAATCAAAAAGAGGGGATGGCCAGCTGACTGCC TGTGAGGTGATGCTGTTCCACCATGAAGACATGGGTATTCCTTGGGAAATTGCAAAGCTTGGAGTCCGGCAGGGTATGTGGGGAGCTGTGAAGAAGATTG AGCCTGGTCTACGTGCATATCAGAAACATAGAGCATCTGCAGCTCCACTTTCACGTAGTGCTTTTATGGCTCAGATCAACACCAAAGTGAGTGCAGACTA CGTGAGATCTTTGGAGAGCAGGACTAGTAGTGATATGTTAGAGATTGAATCTCAGGAAACACCTGAGAAACGTGTTGGGAATAATATACCGAAGTTTTTA GTGATTGGTGGGGCTGTTGCTCTTGCTTGTACTCTTGACCGGGGGCTCGCAACTAAGGCACTTATATTTGGAGTCGCCAGAAGGTTTGCAATTGGAAGGA GGATGTGA
AA sequence Show only first row Show all	>Potri.001G450100.1 pacid=42788605 polypeptide=Potri.001G450100.1.p locus=Potri.001G450100 ID=Potri.001G450100.1.v4.1 annot-version=v4.1 MALGSVLLEILQRPTIGEVLSEILIFVIPLWVAVAVGVLVGWAWKPKWASNLSREMLLDSKVSKEAKKEGEFSATTRSSVIPSFNILKFQLPSCVSWVAD DGGFQKDSLSVPPTLNSECSSSKMKKEKPDLVMEDDLEHLSKLVEVTDGGPAWIQMMDRSTPTMSYQAWRRDPETGPPQYRSRTVYEDVTPELMRDFFWD DEFRAKWDDMLLHAETLEDCPTTGTMLVQWVRKFPFFCSDREYIIGRRIWESGRMYYCVTKGVPCSSVPRRNKPRRVDLYYSSWCIRAVESKRGDGQLTA CEVMLFHHEDMGIPWEIAKLGVRQGMWGAVKKIEPGLRAYQKHRASAAPLSRSAFMAQINTKVSADYVRSLESRTSSDMLEIESQETPEKRVGNNIPKFL VIGGAVALACTLDRGLATKALIFGVARRFAIGRRM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Potri.001G450100 [exp]	0	1
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Potri.002G023600 [exp]	2.44	0.9697
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Potri.003G020400 [exp]	6.92	0.9647
AT2G05070		LHCB2.2	LIGHT-HARVESTING CHLOROPHYLL B...		Potri.002G221400 [exp]	7.74	0.9574	2,Pt-LHCB2.1
AT3G29780		RALFL27	ralf-like 27 (.1)		Potri.017G098100 [exp]	8.94	0.9444
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Potri.002G107800 [exp]	10.53	0.9628
AT5G54270		LHCB3*1, LHCB3*...	light-harvesting chlorophyll B...		Potri.001G407100 [exp]	10.58	0.9607	Lhcb3-1,LHCB3.2
AT3G29780		RALFL27	ralf-like 27 (.1)		Potri.017G096300 [exp]	13.26	0.9372
AT5G66600			Protein of unknown function, D...		Potri.009G111100 [exp]	16.24	0.9482
AT2G06510		ATRPA70A, ATRPA...	ARABIDOPSIS THALIANA RPA70-KDA...		Potri.018G065300 [exp]	16.61	0.9565
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Potri.008G159400 [exp]	16.97	0.9502	Pt-APG1.1

Compare expression of checked genes

Potri.001G450100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.