Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32930 625 / 0 Galactosyltransferase family protein (.1) AT1G05170 516 / 0 Galactosyltransferase family protein (.1.2) AT2G32430 506 / 1e-179 Galactosyltransferase family protein (.1) AT1G77810 496 / 4e-176 Galactosyltransferase family protein (.1.2) AT4G26940 486 / 7e-172 Galactosyltransferase family protein (.1.2) AT1G33430 474 / 3e-167 Galactosyltransferase family protein (.1.2) AT1G22015 449 / 2e-157 DD46 Galactosyltransferase family protein (.1) AT1G11730 429 / 8e-150 Galactosyltransferase family protein (.1) AT5G53340 237 / 3e-75 Galactosyltransferase family protein (.1.2) AT4G32120 210 / 1e-64 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G151400 [exp] 733 / 0 AT1G32930 615 / 0.0 Galactosyltransferase family protein (.1) Potri.014G153700 [exp] 520 / 0 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G228900 [exp] 514 / 0 AT1G05170 673 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G089800 [exp] 503 / 9e-179 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.005G171400 [exp] 494 / 4e-175 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2) Potri.019G067300 [exp] 493 / 4e-174 AT1G33430 560 / 0.0 Galactosyltransferase family protein (.1.2) Potri.004G013900 [exp] 468 / 8e-165 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G004200 [exp] 464 / 2e-163 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2) Potri.003G136000 [exp] 251 / 1e-80 AT5G53340 484 / 3e-173 Galactosyltransferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008282 [exp] 674 / 0 AT1G32930 617 / 0.0 Galactosyltransferase family protein (.1) Lus10033248 [exp] 671 / 0 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1) Lus10040062 [exp] 510 / 0 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2) Lus10006933 [exp] 505 / 2e-179 AT1G77810 602 / 0.0 Galactosyltransferase family protein (.1.2) Lus10024750 [exp] 505 / 2e-179 AT1G77810 599 / 0.0 Galactosyltransferase family protein (.1.2) Lus10021538 [exp] 501 / 7e-178 AT1G05170 610 / 0.0 Galactosyltransferase family protein (.1.2) Lus10027185 [exp] 484 / 9e-171 AT1G05170 624 / 0.0 Galactosyltransferase family protein (.1.2) Lus10039657 [exp] 471 / 3e-165 AT1G05170 607 / 0.0 Galactosyltransferase family protein (.1.2) Lus10015107 [exp] 461 / 8e-162 AT1G05170 639 / 0.0 Galactosyltransferase family protein (.1.2) Lus10031567 [exp] 456 / 6e-160 AT1G05170 633 / 0.0 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01762 [poplar] [flax] Galactosyl_T Galactosyltransferase CL0110 [poplar] [flax] PF13334 [poplar] [flax] DUF4094 Domain of unknown function (DUF4094)
Representative CDS sequence Show only first row Show all	>Potri.001G450200.1 pacid=42789655 polypeptide=Potri.001G450200.1.p locus=Potri.001G450200 ID=Potri.001G450200.1.v4.1 annot-version=v4.1 ATGGGTATTAGCAGACCTCAAAAGTCCAGTAATGGAATTCCCACCAGATGGGTTTATCTCTTCTGCATTGCCAGTTTCTTCTTGGGGGTTCTTGTTGTTA ACAGGTTTTGGGATTTTCCTGATCCAGCAAAAATGGATGAGGAAGCTTCATCTGTGAAGAAGGATCAATTAACAGCAGATCATCCCACAGTTAATTGTGA GAAGCAGGAAACTGCTGTTCAGGCAGGAGACATCCTTTCTCGGGTTTCTCAAACTCATGATGTGATCATGACACTGGACAAAACAATTTCCTCATTGGAG ATGCAGCTAGCTTCAGCAAGAGCTGCAAAAGTTATCAATGAGGATGGATCTCCGATGGTCACAAAATCAGGAACCGAGCATTTGAAGGAGCGACCAAAGG TTTTCTTTGTTATGGGAATAATTACTGCATTCAGCAGCAGGAAGCGAAGGGACTCGATTAGAGAAACCTGGATGCCCAAAGGAGAGGAGTTAAAAAAGTT GGAAACAGAGAAGGGTATTATAATACGGTTTGTTATAGGACACAGTGCATCTCCAGGTGGTGTTTTGGACCGTGCTATTGAAGCAGAAGATGATCAACAC AAGGATTTCCTGAGACTGAATCATGTAGAAGGTTATCATGAATTATCGTCGAAAACACAAATATATTTTTCAACAGCTGTTGCTAAGTGGGATGCTGACT TCTATATTAAAGTTGATGACGATGTGCACATAAATCTTGGCATGGTCGGATCTACCTTGGCCCGTCATAGATCAAAGCCTCGTGTTTATATGGGTTGTAT GAAGTCTGGACCTGTACTAGCACAGACAGGAGTCAAGTACCATGAGCCAGAATATTGGAAATTTGGTGAGGAGGGGAACAAGTATTTTCGGCATGCAACT GGGCAAATATATGCAATTTCTAAAGACTTGGCCACCTATATCTCAGTAAATCGACACATACTTCATAGATATGCAAATGAAGATGTTTCTCTAGGTTCTT GGTTTATTGGTCTTGATGTTGAGCATATTGATGATCGAAGCCTCTGCTGTGGGACTGCACCTGATTGCGAGTGGAAAGCCCAGGCAGGTAATCCTTGTGC TGCATCGTTTGATTGGAGCTGCAGTGGCATTTGTAAGTCAGTGGAAAGAATGGAGGAAGTACACCAGCGATGTGGGGAAGGTGAGGGAGCAATCTGGCAT ACAAGTTTCTGA
AA sequence Show only first row Show all	>Potri.001G450200.1 pacid=42789655 polypeptide=Potri.001G450200.1.p locus=Potri.001G450200 ID=Potri.001G450200.1.v4.1 annot-version=v4.1 MGISRPQKSSNGIPTRWVYLFCIASFFLGVLVVNRFWDFPDPAKMDEEASSVKKDQLTADHPTVNCEKQETAVQAGDILSRVSQTHDVIMTLDKTISSLE MQLASARAAKVINEDGSPMVTKSGTEHLKERPKVFFVMGIITAFSSRKRRDSIRETWMPKGEELKKLETEKGIIIRFVIGHSASPGGVLDRAIEAEDDQH KDFLRLNHVEGYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHINLGMVGSTLARHRSKPRVYMGCMKSGPVLAQTGVKYHEPEYWKFGEEGNKYFRHAT GQIYAISKDLATYISVNRHILHRYANEDVSLGSWFIGLDVEHIDDRSLCCGTAPDCEWKAQAGNPCAASFDWSCSGICKSVERMEEVHQRCGEGEGAIWH TSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32930			Galactosyltransferase family p...		Potri.001G450200 [exp]	0	1
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Potri.017G144700 [exp]	2.00	0.9287
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Potri.002G078600 [exp]	3.60	0.9395	ACO1
					Potri.008G115533 [exp]	4.24	0.9286
AT3G10180			P-loop containing nucleoside t...		Potri.006G040700 [exp]	5.65	0.9165
AT2G36670			Eukaryotic aspartyl protease f...		Potri.006G118800 [exp]	7.21	0.8795
AT1G67330			Protein of unknown function (D...		Potri.001G056300 [exp]	8.00	0.9283
AT3G15620		UVR3	UV REPAIR DEFECTIVE 3, DNA pho...		Potri.003G060000 [exp]	8.24	0.9062
AT1G78520			Carbohydrate-binding X8 domain...		Potri.001G380600 [exp]	8.48	0.8645
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Potri.003G212700 [exp]	8.48	0.8890	Pt-MOD1.2
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.017G134900 [exp]	8.83	0.8975	TMK1.1

Compare expression of checked genes

Potri.001G450200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.