Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10550 938 / 0 Subtilase family protein (.1.2.3) AT4G10540 930 / 0 Subtilase family protein (.1) AT1G32960 923 / 0 ATSBT3.3 Subtilase family protein (.1) AT1G32940 909 / 0 ATSBT3.5 Subtilase family protein (.1) AT4G10510 902 / 0 Subtilase family protein (.1) AT1G32950 893 / 0 Subtilase family protein (.1) AT4G10520 889 / 0 Subtilase family protein (.1) AT4G10530 840 / 0 Subtilase family protein (.1) AT4G21650 786 / 0 Subtilase family protein (.1) AT4G21630 783 / 0 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G151200 [exp] 1341 / 0 AT1G32960 906 / 0.0 Subtilase family protein (.1) Potri.011G150900 [exp] 852 / 0 AT1G32960 744 / 0.0 Subtilase family protein (.1) Potri.001G450600 [exp] 835 / 0 AT1G32960 772 / 0.0 Subtilase family protein (.1) Potri.004G161400 [exp] 740 / 0 AT4G10550 659 / 0.0 Subtilase family protein (.1.2.3) Potri.001G002200 [exp] 595 / 0 AT4G26330 891 / 0.0 UNFERTILIZED EMBRYO SAC 17, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050000 [exp] 557 / 0 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050300 [exp] 556 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050100 [exp] 554 / 0 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.014G171600 [exp] 535 / 3e-180 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035478 [exp] 689 / 0 AT4G10550 659 / 0.0 Subtilase family protein (.1.2.3) Lus10007083 [exp] 509 / 1e-169 AT5G45650 956 / 0.0 subtilase family protein (.1) Lus10016064 [exp] 508 / 5e-169 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10020458 [exp] 506 / 2e-168 AT5G45650 940 / 0.0 subtilase family protein (.1) Lus10023048 [exp] 503 / 1e-167 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10039087 [exp] 501 / 8e-167 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10002780 [exp] 496 / 7e-165 AT5G45650 909 / 0.0 subtilase family protein (.1) Lus10038774 [exp] 494 / 2e-164 AT5G59810 839 / 0.0 Subtilase family protein (.1) Lus10039085 [exp] 493 / 6e-164 AT5G59810 827 / 0.0 Subtilase family protein (.1) Lus10038772 [exp] 489 / 2e-162 AT5G59810 815 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.001G450401.1 pacid=42789553 polypeptide=Potri.001G450401.1.p locus=Potri.001G450401 ID=Potri.001G450401.1.v4.1 annot-version=v4.1 ATGGGAAAACCAAGACCAATATGTGCTCTGGTTTGTCTTTTTCTCTTTCTCTGTGGCCAAGTCATCTTGATGATCACGAAGGTGGAGGCCACTAGCAATG TCCATATTGTTTATCTAGGAGGAAAGCAGCATGATGATCCTATGCTAAAAACAGATTCACATCATGATATGCTTGCTAGTGTTGTGGGGAGCAAGGAAAT CGCCTCAGAATTGATGGTGTACAGCTACAAACATGGTTTCTCTGGGTTTGCAGCCAAGTTGACAGAGTCTCAGGCTCAAAAAGTTGCCGAATTGCCCGGC GTTGTTCGAGTTATACCAAACAGTCTTCACAGGCTACAAACAACTAGGAGTTGGGATTTCCTAGGCCTATCTGCTCATTCTCCTGCCAATACTCTTCATA ACAGCAGCATGGGTGATGGAGTTATCATAGGTGTTCTTGACACAGGAATATGGCCGGAGGCTAAAGCGTTTAGTGATAAAGGACTTGGACCAATCCCATC CCACTGGAAAGGTGTTTGTGAATCCGGAAAGCGCTTTAAGGCTAAAAGCCACTGTAACAAGAAAATTATTGGAGCCCGTTGGTTTGTTGAAGGATTTCTT GCTGAATATGGTCAGCCATTGAACACATCTGGGAACAGGGAGTTCTTTTCCCCAAGAGATGCAAATGGACATGGGACTCACACAGCTAGCACTGCAGCTG GTACTTTTATAGACGATGTTAGCTACAGAGGCCTTGCACTTGGAACTATAAGAGGTGGTGCACCTCGTGCTCGGTTGGCAATATACAAGGTTTGTTGGAA TGTTCTTGGAGGACAATGCTCTTCTGCCGATATATTGAAAGCTTTCGATGAAGCCATACATGATGGGGTTGATGTGTTATCACTGTCCATTGGGTCTTCA ATTCCTTTATTTTCAGATATTGATGAACGTGATGGCATAGCTACAGGTTCCTTTCATGCTGTGGCCAAGGGAATCACTGTAGTATGTGGAGCTGCAAATG ATGGACCTTTTGCTCAGACAGTGCAGAATACAGCTCCTTGGATTTTAACCGTTGCAGCCAGCAGCATGGATCGAGCCCTTCCTACTCCTATAACACTTGG GAACAATAAAACTTTCCTGGGCCAAGCCATATATTCTGGAAAGGAAATTGGTTTCAGAAGCTTAATTTATCCAGAGGCCAAGGGACTGAACCCCAACTCT GCAGGTGTCTGTCAATTTCTCTCAGTTGATAATTCTATGGTAGCCGGAAAGGTGGTTCTCTGCTTCACCTCAATGAATCTTGGCGCTGTAAGAAGTGCTT CAGAAGTTGTGAAGGAAGCAGGTGGAGTGGGGTTGATTGTTGCTAAGAATCCCAGTGAAGCCTTGTACCCCTGCACTGATGGTTTCCCATGCGTTGAAGT CGACTATGAGATTGGAACACGGATTCTGTTTTACATCCGGTCTACGAGGTCCCCTGTTGTAAAGTTGAGCCCTTCTAAAACAATTGTGGGCAAGCCTGTG TTGGCAAAGGTGGCACATTTCTCATCTAGAGGGCCTAATTCAATTGCTCCTGCAATTTTGAAGCCTGATATAGCTGCACCTGGGGTGAACATTTTAGCTG CTACTTCGCCTCTTGATCGATTCCAGGATGGTGGATATGTCATGCATTCAGGAACATCAATGGCAACTCCTCATGTCTCAGGCATAGCGGCTCTTCTTAA AGCAATACATCCTGATTGGTCGCCAGCATCAATTAAATCTGCAATTGTCACAACTGCATGGATAAATAATCCTTCAGGTTTTCCAATATTTGCTGAAGGA TCTCCCCAGAAGTTGGCCGATCCATTTGACTATGGAGGAGGCATTGCAAATCCAAATGGCGCAGCACACCCAGGCCTGGTTTATGACATGGGCACAGATG ACTACGTGAATTACCTCTGTGCCATGGACTACAACAACACTGCTATCTCTAGGCTCACAGGAAAGCCCACAGTATGCCCCACTGAAGGACCATCCATTTT GAACATTAACCTGCCTTCCATAACCATACCAAATCTAAGAAATTCCGTTACCCTCACCAGAACTGTTACCAATGTAGGAGCCTCCAACTCCATTTATAGA GTTGTGATTGAGGCTCCATTTTGCTGCAGTGTGTTAGTAGAACCTTATGTCTTGGTCTTCAACTATACAACTAAGAAGATCACCTTCAGCGTGACGGTCA ACACAACCTACCAGGTGAACACAGGATACTTTTTTGGGAGCATCACATGGATTGATGGAGTGCATACTGTGAGAAGTCCCTTGTCTGTCAGAACTGAAAT CTCACAACCTTACATTGATGAAAAATAA
AA sequence Show only first row Show all	>Potri.001G450401.1 pacid=42789553 polypeptide=Potri.001G450401.1.p locus=Potri.001G450401 ID=Potri.001G450401.1.v4.1 annot-version=v4.1 MGKPRPICALVCLFLFLCGQVILMITKVEATSNVHIVYLGGKQHDDPMLKTDSHHDMLASVVGSKEIASELMVYSYKHGFSGFAAKLTESQAQKVAELPG VVRVIPNSLHRLQTTRSWDFLGLSAHSPANTLHNSSMGDGVIIGVLDTGIWPEAKAFSDKGLGPIPSHWKGVCESGKRFKAKSHCNKKIIGARWFVEGFL AEYGQPLNTSGNREFFSPRDANGHGTHTASTAAGTFIDDVSYRGLALGTIRGGAPRARLAIYKVCWNVLGGQCSSADILKAFDEAIHDGVDVLSLSIGSS IPLFSDIDERDGIATGSFHAVAKGITVVCGAANDGPFAQTVQNTAPWILTVAASSMDRALPTPITLGNNKTFLGQAIYSGKEIGFRSLIYPEAKGLNPNS AGVCQFLSVDNSMVAGKVVLCFTSMNLGAVRSASEVVKEAGGVGLIVAKNPSEALYPCTDGFPCVEVDYEIGTRILFYIRSTRSPVVKLSPSKTIVGKPV LAKVAHFSSRGPNSIAPAILKPDIAAPGVNILAATSPLDRFQDGGYVMHSGTSMATPHVSGIAALLKAIHPDWSPASIKSAIVTTAWINNPSGFPIFAEG SPQKLADPFDYGGGIANPNGAAHPGLVYDMGTDDYVNYLCAMDYNNTAISRLTGKPTVCPTEGPSILNINLPSITIPNLRNSVTLTRTVTNVGASNSIYR VVIEAPFCCSVLVEPYVLVFNYTTKKITFSVTVNTTYQVNTGYFFGSITWIDGVHTVRSPLSVRTEISQPYIDEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10550			Subtilase family protein (.1.2...		Potri.001G450401 [exp]	0	1
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Potri.016G085900 [exp]	10.86	0.8575
AT3G14172			unknown protein		Potri.003G070400 [exp]	14.07	0.8568
AT5G19390			Rho GTPase activation protein ...		Potri.001G275200 [exp]	18.33	0.8010
AT3G53540			unknown protein		Potri.016G080200 [exp]	21.49	0.8457
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Potri.002G254600 [exp]	25.00	0.8507
AT3G44820			Phototropic-responsive NPH3 fa...		Potri.009G150500 [exp]	28.53	0.8142
AT5G57670			Protein kinase superfamily pro...		Potri.006G173700 [exp]	28.56	0.7958
AT3G09980			Family of unknown function (DU...		Potri.010G235600 [exp]	28.72	0.7938
AT3G56930			DHHC-type zinc finger family p...		Potri.006G027400 [exp]	29.15	0.8302
AT1G79620			Leucine-rich repeat protein ki...		Potri.006G114400 [exp]	36.33	0.8288

Compare expression of checked genes

Potri.001G450401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.