Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32960 773 / 0 ATSBT3.3 Subtilase family protein (.1) AT4G10540 761 / 0 Subtilase family protein (.1) AT1G32940 749 / 0 ATSBT3.5 Subtilase family protein (.1) AT4G10550 749 / 0 Subtilase family protein (.1.2.3) AT1G32950 732 / 0 Subtilase family protein (.1) AT4G10510 731 / 0 Subtilase family protein (.1) AT4G10520 731 / 0 Subtilase family protein (.1) AT4G21650 705 / 0 Subtilase family protein (.1) AT4G10530 702 / 0 Subtilase family protein (.1) AT1G66220 680 / 0 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G150900 [exp] 1324 / 0 AT1G32960 744 / 0.0 Subtilase family protein (.1) Potri.011G151200 [exp] 850 / 0 AT1G32960 906 / 0.0 Subtilase family protein (.1) Potri.001G450401 [exp] 831 / 0 AT4G10550 938 / 0.0 Subtilase family protein (.1.2.3) Potri.004G161400 [exp] 795 / 0 AT4G10550 659 / 0.0 Subtilase family protein (.1.2.3) Potri.001G002200 [exp] 610 / 0 AT4G26330 891 / 0.0 UNFERTILIZED EMBRYO SAC 17, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G146300 [exp] 593 / 0 AT4G10550 546 / 0.0 Subtilase family protein (.1.2.3) Potri.014G171600 [exp] 591 / 0 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050000 [exp] 591 / 0 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G455800 [exp] 587 / 0 AT4G10550 558 / 0.0 Subtilase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035478 [exp] 715 / 0 AT4G10550 659 / 0.0 Subtilase family protein (.1.2.3) Lus10016064 [exp] 570 / 0 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039087 [exp] 561 / 0 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10038772 [exp] 555 / 0 AT5G59810 815 / 0.0 Subtilase family protein (.1) Lus10039086 [exp] 554 / 0 AT5G59810 850 / 0.0 Subtilase family protein (.1) Lus10023048 [exp] 553 / 0 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10007083 [exp] 549 / 0 AT5G45650 956 / 0.0 subtilase family protein (.1) Lus10020458 [exp] 542 / 0 AT5G45650 940 / 0.0 subtilase family protein (.1) Lus10038774 [exp] 540 / 0 AT5G59810 839 / 0.0 Subtilase family protein (.1) Lus10002780 [exp] 538 / 0 AT5G45650 909 / 0.0 subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.001G450600.1 pacid=42791607 polypeptide=Potri.001G450600.1.p locus=Potri.001G450600 ID=Potri.001G450600.1.v4.1 annot-version=v4.1 ATGGACCCTAAATCCAGTAAATGGAGAGGGTCAAGCAAAAATCAGTTCTTCATGATCTTAGCTATCATTTTACTTCAACACCAGCTTCATATTCCTGTAA TACATGCTGAGACTGCAAAGAAAGTGCACATTGTGTATATGGGAGAGAAGAGGCATGAGGATCCAGCAACAACCAAAAAAACTCACTATGAAATGCTGTC GACATTGTTAGGCAGTAAGGAAGCAGCACAGAGTTCAATTCTCTACAGCTATAGGCATGGCTTTTCTGGGTTCGCTGCAAGAATTACAGAGTCTCAGGCG GCAGAAATTGCAGAGTTTCCTGGTGTTGTTCAAGTAATTCCAAATGGGATTCACAAGCTTCACACGACTAGAAGTTGGGAATTCATTGGTCTCAAACATC ATTCTCCACAAAATCTGTTAACACAAAGCAACATGGGCCAAGGAACTATCATTGGTGTTATTGATTCAGGAGTGTGGCCAGAATCCAAAAGTTTTCATGA TGAAGGCATGGGGCCAGTGCCATCTCGTTGGAAAGGAACATGTCAGCAGGGTGAGCACTTCAAGCCATACAATTGCAACAGAAAGATCATTGGGGCACGC TGGTTCGTAAAAGGATTTCAGGATCAAATACATTTCAACACAACTGAAAGCAGGGAATTCATGTCGCCGCGGGATGGAGATGGCCATGGCACTCATACAG CTTCTACAGCAGCTGGTAATTTCGTTGCAAAAGCAAGCTATAAAGGACTAGCTACAGGTTTAGCAAGAGGAGGAGCACCTCTTGCTCACTTAGCCATTTA TAAGGTTTGTTGGAACATTGAAGATGGAGGATGCACCGACGCAGATATTCTGAAAGCATTTGACAAAGCCATACATGATGGAGTAGATATCCTATCTGTG TCTATTGGCAATGACATTCCTTTGTTCTCTTATGCCGATATGCGTAATTCAATTGCAATTGGCTCCTTTCATGCAACTTCAAAGGGAATCACAGTAGTCT GTTCAGCAGGAAATGATGGCCCTATCTCGCAGACAGTTGCGAATACAGCACCTTGGCTCACCACTGTTGCAGCCTCTACAATTGACAGGGCCTTTCCAAC CGCTATTATACTTGGAAACAACAAAACCCTCAGGGGTCAATCTATTACTATAGGTAAGCATACTCACAGATTTGCGGGCCTTACATACTCTGAACGCATA GCTTTGGATCCAATGGTTTCGAGCCAGGATTGTCAGCCTGGAAGTCTAAATCCAACATTAGCGGCAGGAAAAATCATACTTTGTCTCTCAAAATCAGATA CACAGGATATGTTTTCTGCTTCAGGATCTGTGTTTCAAGCAGGAGGCGTTGGACTCATATATGCGCAATTTCACACTGATGGGATTGAGTTATGCGAGTG GATTCCATGCGTCAAAGTAGATTATGAAGTAGGGACACAGATACTTTCCTACATTAGACAAGCTAGGTCTCCAACTGCAAAGCTGAGTTTTCCAAAGACT GTTGTTGGCAAAAGGGTATCTCCTCGACTTGCTTCATTCTCCTCCAGAGGACCAAGTTCAATTACTCCAGAAGTTCTAAAGCCTGACATAGCCGCACCGG GTGTGGACATCTTAGCTGCATATACACCAGCCAACAAAGACCAAGGTGACTCGTATGAATTCCTATCAGGAACTTCAATGGCTTGTCCCCATGTATCAGG AATTGTAGCTCTCATTAAATCCTTACATCCAAATTGGTCTCCTGCAGCCATAAGATCAGCTCTTGTCACAACTGCTTCCCAAACTGGAACAGATGGAATG AAAATCTTTGAGGAGGGCTCAACAAGAAAGGAAGCAGACCCATTTGACATGGGTGGGGGACATGTCAATCCTGAAAAAGCAGCGTATCCAGGCCTTGTTT ATGACACCACCACAGAGGAATATATTCAATACCTTTGCTCCATAGGCTACAGTAGTTCATCCATTACCAGGTTAACCAATACCAAAATCAATTGCGTGAA AAAGACCAATACTAGACTTAACCTCAATCTCCCTTCAATCACCATTCCAAACCTGAAAAAAAAAGTAACAGTGACAAGAAAAGTGACAAATGTGGGAAAT GTTAATTCAGTGTACAAAGCTATAGTTCAGGCTCCAATTGGCATAAGCATGGCAGTAGAGCCTAAAACTTTAAGTTTCAACAGGATCAACAAAATTCTGT CCTTCAGAGTTACCTTCTTGTCGAGTCAGAAAGTTCAGGGGGAATATAGATTTGGGAGCCTAACATGGACTGATGGTGAGCATTTTGTTAGGAGTCCAAT ATCTGTACGTGATAGGGAGATATTAGATTATTGA
AA sequence Show only first row Show all	>Potri.001G450600.1 pacid=42791607 polypeptide=Potri.001G450600.1.p locus=Potri.001G450600 ID=Potri.001G450600.1.v4.1 annot-version=v4.1 MDPKSSKWRGSSKNQFFMILAIILLQHQLHIPVIHAETAKKVHIVYMGEKRHEDPATTKKTHYEMLSTLLGSKEAAQSSILYSYRHGFSGFAARITESQA AEIAEFPGVVQVIPNGIHKLHTTRSWEFIGLKHHSPQNLLTQSNMGQGTIIGVIDSGVWPESKSFHDEGMGPVPSRWKGTCQQGEHFKPYNCNRKIIGAR WFVKGFQDQIHFNTTESREFMSPRDGDGHGTHTASTAAGNFVAKASYKGLATGLARGGAPLAHLAIYKVCWNIEDGGCTDADILKAFDKAIHDGVDILSV SIGNDIPLFSYADMRNSIAIGSFHATSKGITVVCSAGNDGPISQTVANTAPWLTTVAASTIDRAFPTAIILGNNKTLRGQSITIGKHTHRFAGLTYSERI ALDPMVSSQDCQPGSLNPTLAAGKIILCLSKSDTQDMFSASGSVFQAGGVGLIYAQFHTDGIELCEWIPCVKVDYEVGTQILSYIRQARSPTAKLSFPKT VVGKRVSPRLASFSSRGPSSITPEVLKPDIAAPGVDILAAYTPANKDQGDSYEFLSGTSMACPHVSGIVALIKSLHPNWSPAAIRSALVTTASQTGTDGM KIFEEGSTRKEADPFDMGGGHVNPEKAAYPGLVYDTTTEEYIQYLCSIGYSSSSITRLTNTKINCVKKTNTRLNLNLPSITIPNLKKKVTVTRKVTNVGN VNSVYKAIVQAPIGISMAVEPKTLSFNRINKILSFRVTFLSSQKVQGEYRFGSLTWTDGEHFVRSPISVRDREILDY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32960		ATSBT3.3	Subtilase family protein (.1)		Potri.001G450600 [exp]	0	1
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Potri.003G050100 [exp]	1.73	0.8556	ATHB.11
AT4G37080			Protein of unknown function, D...		Potri.007G041100 [exp]	2.00	0.8272
AT4G28100			unknown protein		Potri.013G148700 [exp]	6.92	0.7500
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.006G231000 [exp]	7.74	0.7855
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.005G105600 [exp]	8.94	0.7574
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Potri.005G209800 [exp]	10.09	0.7715
AT5G52870		MAKR5	MEMBRANE-ASSOCIATED KINASE REG...		Potri.015G027500 [exp]	12.96	0.7275
AT1G55340			Protein of unknown function (D...		Potri.001G004000 [exp]	13.49	0.7478
AT4G10550			Subtilase family protein (.1.2...		Potri.001G455800 [exp]	15.42	0.7458
AT1G53050			Protein kinase superfamily pro...		Potri.011G119400 [exp]	15.49	0.7328

Compare expression of checked genes

Potri.001G450600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.