Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32990 308 / 4e-107 PRPL11 plastid ribosomal protein l11 (.1) AT5G51610 164 / 5e-51 Ribosomal protein L11 family protein (.1) AT4G35490 105 / 2e-28 MRPL11 mitochondrial ribosomal protein L11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G150700 [exp] 364 / 2e-129 AT1G32990 303 / 3e-105 plastid ribosomal protein l11 (.1) Potri.007G058600 [exp] 107 / 2e-29 AT4G35490 239 / 2e-82 mitochondrial ribosomal protein L11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017349 [exp] 276 / 2e-94 AT1G32990 306 / 6e-107 plastid ribosomal protein l11 (.1) Lus10010145 [exp] 275 / 3e-94 AT1G32990 306 / 7e-107 plastid ribosomal protein l11 (.1) Lus10035432 [exp] 103 / 1e-27 AT4G35490 272 / 2e-95 mitochondrial ribosomal protein L11 (.1) Lus10031045 [exp] 100 / 2e-26 AT4G35490 261 / 4e-91 mitochondrial ribosomal protein L11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00298 [poplar] [flax] Ribosomal_L11 Ribosomal protein L11, RNA binding domain PF03946 [poplar] [flax] Ribosomal_L11_N Ribosomal protein L11, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G450800.1 pacid=42793700 polypeptide=Potri.001G450800.1.p locus=Potri.001G450800 ID=Potri.001G450800.1.v4.1 annot-version=v4.1 ATGGCTTCCTCTTCTTCTCTCTCAACCCATTATCACTTCATTTCTCCTCTTTCTCCTTCTTCAAAGAACAATGCTAACATCAAGCTTTCCTCTTCTCTTT TTGCTTCTCCCATTAGCTTATCTTCAAACCCCAATATTTCTCTTCAATTCTTTGACAAGAAACACTCCCCACTTCTTTCAACAGCTCCAAGAAGGCTCTC GGTTATTGCAATGGCCCCTCCAAAGCCTGGTGGAAAGGCCAAGAAAGTGATTGGATTGATAAAATTGGCTTTAGAGGCAGGGAAGGCAACTCCTGCACCA CCTGTAGGACCAGCACTTGGTTCAAAGGGTGTAAATATTATGGCTTTTTGTAAGGATTATAATGCCAGAACTGCAGATAAAGCTGGTTATGTCATTCCTG TTGAGATTACTGTTTATGATGATAAAAGCTTTACTTTTATTTTGAAGACACCTCCTGCTTCAGTTTTGTTGCTCAAGGCTGCAGGAGTGGAGAAAGGTTC TAAAGATCCAAAGATGGAGAAAGTGGGTAAGGTCACGATTGACCAATTACGCACCATAGCTACTGAAAAGCTTCCAGACTTGAATTGCACAACCATTGAA TCAGCAATGAGAATCATAGCAGGCACTGCAGCTAACATGGGGATCGATGTAGATCCTCCCATTCTTGAACCTAAAAAGAAAGTTGTCTTGTAG
AA sequence Show only first row Show all	>Potri.001G450800.1 pacid=42793700 polypeptide=Potri.001G450800.1.p locus=Potri.001G450800 ID=Potri.001G450800.1.v4.1 annot-version=v4.1 MASSSSLSTHYHFISPLSPSSKNNANIKLSSSLFASPISLSSNPNISLQFFDKKHSPLLSTAPRRLSVIAMAPPKPGGKAKKVIGLIKLALEAGKATPAP PVGPALGSKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDKSFTFILKTPPASVLLLKAAGVEKGSKDPKMEKVGKVTIDQLRTIATEKLPDLNCTTIE SAMRIIAGTAANMGIDVDPPILEPKKKVVL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Potri.001G450800 [exp]	0	1
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Potri.002G180400 [exp]	2.00	0.9879	TMP14.1
AT3G13120			Ribosomal protein S10p/S20e fa...		Potri.011G092800 [exp]	2.44	0.9880
AT4G19100		PAM68	photosynthesis affected mutant...		Potri.001G132001 [exp]	3.46	0.9867
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Potri.001G384600 [exp]	4.00	0.9856
AT4G22830			unknown protein		Potri.001G114800 [exp]	5.19	0.9818
AT1G29700			Metallo-hydrolase/oxidoreducta...		Potri.008G117600 [exp]	6.32	0.9737
AT1G11430			plastid developmental protein ...		Potri.011G032900 [exp]	7.48	0.9825
AT1G65230			Uncharacterized conserved prot...		Potri.013G085300 [exp]	7.48	0.9820
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Potri.011G083300 [exp]	8.36	0.9806	Pt-HHOA.1
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Potri.004G140500 [exp]	8.66	0.9839

Compare expression of checked genes

Potri.001G450800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.