Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46800 285 / 3e-92 ATMTP1, ZAT1, ZAT, ATCDF1 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) AT3G58810 281 / 1e-90 ATMTPA2, MTP3, MTPA2, ATMTP3 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2) AT3G61940 239 / 2e-75 ATMTPA1, MTPA1 Cation efflux family protein (.1) AT2G29410 169 / 3e-48 ATMTPB1, MTPB1 metal tolerance protein B1 (.1) AT1G33020 77 / 8e-15 F-box and associated interaction domains-containing protein (.1) AT2G04620 72 / 3e-13 Cation efflux family protein (.1) AT3G12100 54 / 1e-07 Cation efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G150600 [exp] 332 / 9e-111 AT3G58810 281 / 2e-91 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2) Potri.014G106200 [exp] 268 / 6e-86 AT2G46800 277 / 4e-90 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Potri.002G180100 [exp] 260 / 7e-83 AT2G46800 502 / 3e-178 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Potri.001G245800 [exp] 164 / 2e-46 AT2G29410 336 / 7e-114 metal tolerance protein B1 (.1) Potri.005G110300 [exp] 72 / 3e-13 AT2G04620 483 / 2e-158 Cation efflux family protein (.1) Potri.016G045200 [exp] 56 / 3e-08 AT3G12100 536 / 0.0 Cation efflux family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012604 [exp] 265 / 3e-84 AT3G61940 500 / 2e-177 Cation efflux family protein (.1) Lus10002674 [exp] 251 / 1e-79 AT3G58810 503 / 5e-179 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2) Lus10030192 [exp] 218 / 6e-70 AT2G46800 221 / 1e-72 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Lus10040744 [exp] 166 / 8e-47 AT2G29410 344 / 1e-116 metal tolerance protein B1 (.1) Lus10016487 [exp] 166 / 1e-46 AT2G29410 345 / 8e-117 metal tolerance protein B1 (.1) Lus10013358 [exp] 69 / 3e-12 AT2G04620 783 / 0.0 Cation efflux family protein (.1) Lus10004102 [exp] 69 / 3e-12 AT2G04620 784 / 0.0 Cation efflux family protein (.1) Lus10004168 [exp] 49 / 4e-06 AT3G12100 511 / 0.0 Cation efflux family protein (.1.2) Lus10000033 [exp] 45 / 2e-05 AT2G47830 186 / 3e-57 Cation efflux family protein (.1.2) Lus10040922 [exp] 46 / 5e-05 AT2G47830 545 / 0.0 Cation efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [poplar] [flax] Cation_efflux Cation efflux family
Representative CDS sequence Show only first row Show all	>Potri.001G450900.1 pacid=42790285 polypeptide=Potri.001G450900.1.p locus=Potri.001G450900 ID=Potri.001G450900.1.v4.1 annot-version=v4.1 ATGGACGTGCGAAATTCAGAGCATGGACGTGTAATTGAAGTACATGTAGATGTTCCAGCTGCGGAGAATAGCCTGGGTGGGAGTAGGATTTGTGGAGGAG TATCGTGTGGATTTTCAGATGCTCAGACCAGTTCTAAAGATGCAAAGGAACGAGGGGCATCCATGAAGAAACTTGGGTGGGCAGTTGGGCTCTGTCTTGT CTTCATGGCTGTTGAAATTGCTGGAGGCATAAAAGCCAATAGTCTTGCAATTTTGACCGATGCAGCTCATCTTTTATCAGATGTTGCAGCATTTGCAATC TCCTTGTTTTCAATCTGGGCATCCGGATGGGAGGCAACTCCACGTCGGACTTATGGATATTTTAGGATTGAGATACTTGGTGCTCTTATTTCCATCCAGA TGATATGGCTTCTTGCAGGTATCCTTGTATATGAAGCTATTGTTAGAATTATTCATGATACAGGTGAAGTTAAAGGCGCACTCATGTTTGCTGTTGCTGC TGTTGGCTTACTGGTTAATATTGGCATGGCATTCTTGTTGGGTCACGACCATGGTCACGGGCACGGTCATGGTCACGGGCACGGTCATGGGCACGGTCAC GAGCATGGTGAGCACAATCATGACCACAGTGATGATGGCCATAGCCATGAGGGTGATGATGGCCATAGCCATGAGGGTGATGATGGCCATAGCCATGAGG ATCATGATCATAGCCATGAGGATCATGATCATGCACATAACCACATGCTGAGTGGAGCCACTCATCATAATCACCACCATCATGAAGGGAGCTCTGAAAA CAATGATGAACATCATCATACACACGGAGCAGATCTTGCTGAGCCTCTGCTTAGTACTCACACAGAAGTTGACAATAAAACAAAAGGAGGGAGTAAACAA AAGAAGCAGAGAAATATCAATGTTCAGGGGGCCTATCTTCATGTATTGGGAGACTCAATTCAGAGTGTTGGGGTGATGATTGGTGGGGCAATTATATGGT ATAAGCCAGAGTGGAAGATTATTGATCTGATATGCACCCTCGCGTTTTCGATAATCGTTCTAGGCACAACAATCGGTATGATACGGAATATTCTAGAGGT TCTAATGGAAAGTACACCGAGGGAGATTGATGCAACTAGGCTTGAGAAGGGTCTCTGCGAGATGGATGAGGTGGTTGCCATTCATGAACTGCACATTTGG GCAATAACTGTAGGGAAGTTTCTGTTGGCTTGCCATGTTATGATCAAGCCTGATGCTGATGCTGACATGGTACTGGACAAGGTTATAGATTACATTAGGA GAGAACACAATATCACTCATGTGACCATTCAGATAGAGCGACCGTAA
AA sequence Show only first row Show all	>Potri.001G450900.1 pacid=42790285 polypeptide=Potri.001G450900.1.p locus=Potri.001G450900 ID=Potri.001G450900.1.v4.1 annot-version=v4.1 MDVRNSEHGRVIEVHVDVPAAENSLGGSRICGGVSCGFSDAQTSSKDAKERGASMKKLGWAVGLCLVFMAVEIAGGIKANSLAILTDAAHLLSDVAAFAI SLFSIWASGWEATPRRTYGYFRIEILGALISIQMIWLLAGILVYEAIVRIIHDTGEVKGALMFAVAAVGLLVNIGMAFLLGHDHGHGHGHGHGHGHGHGH EHGEHNHDHSDDGHSHEGDDGHSHEGDDGHSHEDHDHSHEDHDHAHNHMLSGATHHNHHHHEGSSENNDEHHHTHGADLAEPLLSTHTEVDNKTKGGSKQ KKQRNINVQGAYLHVLGDSIQSVGVMIGGAIIWYKPEWKIIDLICTLAFSIIVLGTTIGMIRNILEVLMESTPREIDATRLEKGLCEMDEVVAIHELHIW AITVGKFLLACHVMIKPDADADMVLDKVIDYIRREHNITHVTIQIERP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.001G450900 [exp]	0	1
AT1G31812		ACBP6, ACBP	acyl-CoA-binding protein 6 (.1...		Potri.001G130200 [exp]	1.00	0.8130
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.010G208500 [exp]	2.82	0.7383
AT3G06170			Serinc-domain containing serin...		Potri.008G201900 [exp]	3.46	0.7349
AT4G15800		RALFL33	ralf-like 33 (.1)		Potri.005G025800 [exp]	6.48	0.7214	RALFL23.2
AT1G03250			unknown protein		Potri.019G046400 [exp]	7.93	0.7071
AT2G46300			Late embryogenesis abundant (L...		Potri.002G167300 [exp]	11.40	0.7261
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.005G073766 [exp]	13.41	0.6793
AT1G52280		AtRABG3d	RAB GTPase homolog G3D (.1)		Potri.003G053400 [exp]	15.49	0.7280
AT1G51060		HTA10	histone H2A 10 (.1)		Potri.011G131400 [exp]	16.24	0.7106	HTA901
AT2G29900		PS2	Presenilin-2 (.1)		Potri.015G058301 [exp]	19.89	0.6729

Compare expression of checked genes

Potri.001G450900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.