Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RCOMT1.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54160 384 / 1e-132 ATOMT1 O-methyltransferase 1 (.1) AT1G33030 358 / 8e-123 O-methyltransferase family protein (.1) AT1G77520 324 / 7e-109 O-methyltransferase family protein (.1) AT5G53810 282 / 1e-92 O-methyltransferase family protein (.1) AT1G63140 281 / 2e-92 O-methyltransferase family protein (.1.2) AT1G77530 271 / 2e-88 O-methyltransferase family protein (.1) AT1G51990 266 / 1e-86 O-methyltransferase family protein (.1.2) AT1G21130 258 / 4e-83 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G21100 256 / 2e-82 IGMT1 indole glucosinolate O-methyltransferase 1, O-methyltransferase family protein (.1) AT1G21110 255 / 4e-82 IGMT3 indole glucosinolate O-methyltransferase 3, O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G150500 [exp] 529 / 0 AT5G54160 364 / 2e-125 O-methyltransferase 1 (.1) Potri.012G006400 [exp] 416 / 2e-145 AT5G54160 605 / 0.0 O-methyltransferase 1 (.1) Potri.015G003100 [exp] 397 / 4e-138 AT5G54160 583 / 0.0 O-methyltransferase 1 (.1) Potri.013G017210 [exp] 357 / 4e-124 AT5G54160 237 / 5e-77 O-methyltransferase 1 (.1) Potri.016G101600 [exp] 354 / 2e-122 AT5G54160 276 / 5e-92 O-methyltransferase 1 (.1) Potri.014G106600 [exp] 353 / 3e-120 AT5G54160 416 / 3e-145 O-methyltransferase 1 (.1) Potri.002G180600 [exp] 338 / 1e-114 AT5G54160 413 / 2e-144 O-methyltransferase 1 (.1) Potri.002G180433 [exp] 337 / 2e-114 AT5G54160 412 / 4e-144 O-methyltransferase 1 (.1) Potri.002G180466 [exp] 337 / 3e-114 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032929 [exp] 387 / 7e-134 AT5G54160 601 / 0.0 O-methyltransferase 1 (.1) Lus10015576 [exp] 384 / 2e-132 AT5G54160 595 / 0.0 O-methyltransferase 1 (.1) Lus10009442 [exp] 345 / 3e-117 AT1G33030 320 / 9e-108 O-methyltransferase family protein (.1) Lus10005133 [exp] 317 / 3e-106 AT5G54160 381 / 1e-131 O-methyltransferase 1 (.1) Lus10002667 [exp] 314 / 2e-105 AT5G54160 368 / 1e-126 O-methyltransferase 1 (.1) Lus10002669 [exp] 305 / 7e-102 AT5G54160 376 / 5e-130 O-methyltransferase 1 (.1) Lus10014825 [exp] 290 / 5e-96 AT1G33030 270 / 8e-89 O-methyltransferase family protein (.1) Lus10006146 [exp] 285 / 7e-94 AT5G54160 338 / 5e-115 O-methyltransferase 1 (.1) Lus10023892 [exp] 219 / 2e-68 AT3G53140 560 / 0.0 O-methyltransferase family protein (.1) Lus10014400 [exp] 216 / 6e-67 AT3G53140 562 / 0.0 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00891 [poplar] [flax] Methyltransf_2 O-methyltransferase domain CL0123 [poplar] [flax] HTH PF08100 [poplar] [flax] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.001G451100.1 pacid=42789898 polypeptide=Potri.001G451100.1.p locus=Potri.001G451100 ID=Potri.001G451100.1.v4.1 annot-version=v4.1 ATGGCAACCTCAAGCAATGAAGAAGACTATCATCTCCAGTATGCCATGCAACTTGCAAGTGCATCAACTCTGCCTATGGTTTTCAAAGCAGTAATTGAGC TAGGAGTTCTGGAGATCATAGAAAAAGCTGGCCCTGGTGCCTTGCTCTCAGCCTCACAGATTACCTCTCAACTTCCCACTCAAACCAACCCTGATGCCCC TACTGTACTAGACCGTATCCTGTGCCTTCTTGCTAGCCATTCTATTCTGACTTGTTCTCTAGCCACCGAGAATCAAGATAGTGATCAAGTTCAAAGGTTA TATGGATTGGCACCAGTAGCCAAATACTTTATCAAGAAGGAAGATGGAGGGTCCTTGAGTCCCTATTTTCTTGTTATTCAAGATAAAGTCACAGTGGATC TCTGGTACCACTTAAAAGATGTTATTCTTCAAGGAGGGTTTCTATTTCAGAAGGCTTATGGGATGAGTTCTATGGAGTATGTGAAAAAGGATCCAAGATT TGGTGAAGTATTCAGTGGCTTTGTTAGAGGTTTCAACCCTTTATTTATGAAGAGGATTTTGGACATATATGATGGCTTTGAAGGTCTAACATCCTTGGTG GATGTTGGTGGTGGTAATGGTTCTGTCCTTAATATGATCATCTCAAAGTATCCTGCTATTAAGGGCATCAACTTTGATTTGGCTCCAGTTATAGAAAACT CACCATCCTATCCAGGTATTGAGCATGTTGCAGGAGATGTATTCTTAACCATTCCTAAAGGAGAAGCCATTTTCATGAAGTGGGTATCCCATTTCTGGAA CGATGAGAACTTCTTGAAAGTACTAAAGAATTGCTATGAAGCTTTACCGGACAACGGAAAGTTGATAGTAGTGGAAATGGTAATTCCTGAAAGCCCCGGT ACCAGTGTTGCAGATAGAAGTTTGCTGCAGAATTATTTATTCGTGACAAGCATGAATCCGAAGAGAAATGAAAGGACAGAAAAAGAATTTGAACGTTTGG CCAAAGCAGCAGGGTTTTCTCATTTTCGAGTTGCCTGTTCCGTCTGTTCTTTCTCAGTTGTTGAGTTCATTAAAAAGAAGGCAACTGCTAGTACTGCTGC TATAGCAGCGAAGTGA
AA sequence Show only first row Show all	>Potri.001G451100.1 pacid=42789898 polypeptide=Potri.001G451100.1.p locus=Potri.001G451100 ID=Potri.001G451100.1.v4.1 annot-version=v4.1 MATSSNEEDYHLQYAMQLASASTLPMVFKAVIELGVLEIIEKAGPGALLSASQITSQLPTQTNPDAPTVLDRILCLLASHSILTCSLATENQDSDQVQRL YGLAPVAKYFIKKEDGGSLSPYFLVIQDKVTVDLWYHLKDVILQGGFLFQKAYGMSSMEYVKKDPRFGEVFSGFVRGFNPLFMKRILDIYDGFEGLTSLV DVGGGNGSVLNMIISKYPAIKGINFDLAPVIENSPSYPGIEHVAGDVFLTIPKGEAIFMKWVSHFWNDENFLKVLKNCYEALPDNGKLIVVEMVIPESPG TSVADRSLLQNYLFVTSMNPKRNERTEKEFERLAKAAGFSHFRVACSVCSFSVVEFIKKKATASTAAIAAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.001G451100 [exp]	0	1	Pt-RCOMT1.5
					Potri.014G013000 [exp]	5.38	0.9749
AT1G51920			unknown protein		Potri.003G061000 [exp]	10.48	0.9636
AT5G13330	AP2_ERF	RAP2.6L	related to AP2 6l (.1)		Potri.001G067600 [exp]	15.58	0.9509
AT4G27740			Yippee family putative zinc-bi...		Potri.012G019200 [exp]	15.87	0.9505
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Potri.001G225800 [exp]	17.20	0.9731
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G037401 [exp]	19.36	0.9517
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G133951 [exp]	20.14	0.9678
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G033400 [exp]	22.36	0.9628
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G222800 [exp]	22.78	0.9708
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G213100 [exp]	23.43	0.9689

Compare expression of checked genes

Potri.001G451100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.