Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10490 498 / 2e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 481 / 1e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 398 / 6e-139 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G36690 266 / 1e-86 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G44800 245 / 1e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G60290 238 / 5e-76 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 234 / 3e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 230 / 7e-73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G55290 221 / 2e-69 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G13610 221 / 3e-69 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G150100 [exp] 645 / 0 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G106700 [exp] 519 / 0 AT4G10490 468 / 2e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451700 [exp] 512 / 0 AT4G10500 451 / 6e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451600 [exp] 457 / 4e-162 AT4G10500 406 / 5e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 400 / 6e-140 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.015G002800 [exp] 399 / 2e-139 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451300 [exp] 381 / 4e-132 AT4G10500 326 / 1e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150300 [exp] 379 / 2e-131 AT4G10500 327 / 4e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150200 [exp] 377 / 2e-130 AT4G10500 323 / 1e-109 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030185 [exp] 495 / 3e-177 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032930 [exp] 397 / 2e-138 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015573 [exp] 392 / 2e-136 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10035782 [exp] 267 / 2e-87 AT5G24530 258 / 4e-84 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10014398 [exp] 256 / 1e-82 AT2G36690 482 / 4e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10024882 [exp] 248 / 3e-80 AT5G24530 271 / 2e-89 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023890 [exp] 248 / 1e-79 AT2G36690 486 / 5e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000711 [exp] 236 / 2e-75 AT5G24530 263 / 4e-86 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 232 / 3e-73 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10041913 [exp] 224 / 9e-71 AT3G51240 602 / 0.0 TRANSPARENT TESTA 6, flavanone 3-hydroxylase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G451900.1 pacid=42791281 polypeptide=Potri.001G451900.1.p locus=Potri.001G451900 ID=Potri.001G451900.1.v4.1 annot-version=v4.1 ATGTCTCCCCCTGCTAATCTACTACTAGCCGACCTTGCATCAACAGGTGTAAAGCAAATTCCTACTAGCTACATCCGCCCCATCTCCGACCGCCCCAATC TCTCCGATGTTCAGATTTCCGACGTCCCCATTCCTCTAATTGACCTTCACGGCCTTAATGGTCCTAACCATTCTCTTATAATCGAACAAATTAGCCAAGC TTGCGAAAACGATGGCTTCTTCCAGGTGAAGAATCATGGGATACCAGAGGAAATGATCGGTAACGTCATGAACATAGCTAGGCAATTCTTCCATTTGCCT GCAAGTGAAAGGTTAAAAAATTACTCTGATGATCCTACTAAGAACACCAGGTTGTCTACAAGCTTTAATGTTAAGACAGAACAGATTTCTAGTTGGAGAG ATTTCTTGCGACTTCATTGTTACCCTCTTGAAGATTACATACATGAATGGCCTTGCAATCCCCCATCATTCAGGAGAGATGTGGCTGAATATTGTACAAG TATTAGAGGTCTTGTGTTAAAACTGCTCGAGGCCATATCAGAAAGTTTGGGGCTGGAAAGAGACCACATAGATAAGAACTTAGGCAAGCATGGACAGCAT ATGGCTATGAACTACTATCCACCGTGTCCACAGCCAGAGCTCACGTATGGATTGCCAGGACATACCGACCCTAATTTAATCACCATTCTTTTGCAAGATG ACGTGCCTGGATTGCAGGTTCTGAGGAATGGCAAGTGGATTGCTGTGAATCCCATTCCCAATACCTTCATTATCAACATTGGTGATCAAATGCAGGTACT TAGCAACGACCGTTACAAGAGCGTGCTTCATCGAGCAGTGGTGAACTGTAACAAAGAGCGAATATCTATACCAACATTCTACTGTCCTTCGAAAGATGCT GTCATAGGCCCCCCTAAAGAGCTAATTGACGACGATCATCCAGCAGTTTACAGAGATTTTACATATGGTGAATACTATGAGAGGTTTTGGAATAGAGGAC TCGTTAAAGAATGCTGCTTAGACTTGTTCAAAGCCTCTACTGATTCATGA
AA sequence Show only first row Show all	>Potri.001G451900.1 pacid=42791281 polypeptide=Potri.001G451900.1.p locus=Potri.001G451900 ID=Potri.001G451900.1.v4.1 annot-version=v4.1 MSPPANLLLADLASTGVKQIPTSYIRPISDRPNLSDVQISDVPIPLIDLHGLNGPNHSLIIEQISQACENDGFFQVKNHGIPEEMIGNVMNIARQFFHLP ASERLKNYSDDPTKNTRLSTSFNVKTEQISSWRDFLRLHCYPLEDYIHEWPCNPPSFRRDVAEYCTSIRGLVLKLLEAISESLGLERDHIDKNLGKHGQH MAMNYYPPCPQPELTYGLPGHTDPNLITILLQDDVPGLQVLRNGKWIAVNPIPNTFIINIGDQMQVLSNDRYKSVLHRAVVNCNKERISIPTFYCPSKDA VIGPPKELIDDDHPAVYRDFTYGEYYERFWNRGLVKECCLDLFKASTDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Potri.001G451900 [exp]	0	1
AT4G33720			CAP (Cysteine-rich secretory p...		Potri.009G083000 [exp]	3.16	0.9569
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Potri.009G083100 [exp]	9.53	0.9623	Pt-PR1.4
AT3G60130		BGLU16	beta glucosidase 16 (.1.2.3)		Potri.001G226100 [exp]	23.68	0.9463
AT3G19320			Leucine-rich repeat (LRR) fami...		Potri.009G098601 [exp]	28.63	0.9441
AT2G14580		ATPRB1	basic pathogenesis-related pro...		Potri.001G288301 [exp]	33.61	0.8881
AT5G10770			Eukaryotic aspartyl protease f...		Potri.006G232500 [exp]	34.29	0.9436
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Potri.010G245266 [exp]	37.97	0.9416
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Potri.009G045200 [exp]	43.57	0.9408	6
AT3G60130		BGLU16	beta glucosidase 16 (.1.2.3)		Potri.001G225808 [exp]	45.82	0.9405
AT5G10770			Eukaryotic aspartyl protease f...		Potri.006G232400 [exp]	47.02	0.9400

Compare expression of checked genes

Potri.001G451900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.