Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36090 116 / 1e-29 F-box family protein (.1) AT3G44326 110 / 4e-27 F-box family protein (.1) AT2G27310 87 / 5e-19 F-box family protein (.1) AT5G39250 45 / 4e-05 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G054500 [exp] 181 / 1e-53 AT2G27310 122 / 2e-31 F-box family protein (.1) Potri.005G208200 [exp] 175 / 7e-51 AT2G27310 130 / 3e-34 F-box family protein (.1) Potri.011G149950 [exp] 128 / 4e-36 ND / Potri.006G208400 [exp] 117 / 8e-30 AT2G36090 275 / 7e-91 F-box family protein (.1) Potri.009G160700 [exp] 102 / 2e-24 AT2G27310 221 / 9e-70 F-box family protein (.1) Potri.004G199300 [exp] 101 / 5e-24 AT2G27310 248 / 3e-80 F-box family protein (.1) Potri.017G092800 [exp] 50 / 6e-07 AT5G39250 334 / 7e-117 F-box family protein (.1) Potri.004G119500 [exp] 46 / 2e-05 AT5G39250 347 / 8e-122 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028024 [exp] 165 / 2e-47 AT2G27310 158 / 4e-45 F-box family protein (.1) Lus10003731 [exp] 165 / 3e-47 AT2G27310 160 / 3e-46 F-box family protein (.1) Lus10021330 [exp] 114 / 2e-28 AT2G36090 266 / 2e-87 F-box family protein (.1) Lus10017006 [exp] 108 / 2e-26 AT2G36090 255 / 4e-83 F-box family protein (.1) Lus10013309 [exp] 94 / 2e-21 AT2G27310 247 / 4e-80 F-box family protein (.1) Lus10032969 [exp] 42 / 0.0003 AT5G39250 351 / 1e-123 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.001G452000.2 pacid=42788096 polypeptide=Potri.001G452000.2.p locus=Potri.001G452000 ID=Potri.001G452000.2.v4.1 annot-version=v4.1 ATGATGGAGCGTCCGATATGTCATCTCCAGAGCATGAATGGTGAACTGCTAACCGATATCATGTCTCGTGTAGATGGCCCAGCCCTCGCTTCGGTAGCTA GTACATGTTCTGAGCTCCGAGGCATTGCTCGTGATCAAAGCTTGTGGAAAAAGTTGTGTCATTCCAGGTGGCCTTCCACTGCTCTTGAAGAAGCTGAACA TCTGATTTCAGGTTCTGTTCACGGTTGCTTCGACAAATTCTACTCGGACGCCTGCCCACTTGTCTTATATGATGAAGTTGCCAATGCTAACTCTTTGAAA GTGCTTGAATGTGCTGAACTAAATCCCCGCACATCTCCTTCTGATCTACTGTCATTGATTGATGTTTATTACAAGAACAAATGTGTCCTCTCGAGGATCT CGGATGGCATACCTGAGGCTGTAGATATATTCAAACATGGACTTGTTGACAGCAGCTGGGAAATGATCGCTGACGAGCGACAGAAATGGTTTCTAAATTA TCCATTTAAACTGGAATTGATGGACCTTAAAGACGATGAAGATGACGATGACGAAGCATTAGCTTCTCCTATATCATCACTCAATGAGGCTGGAAAATCA AGAGAAAATCTTTGCAAGAAGCTGATAGAGGATCTCAGGTTGAGTTGGATACTAGTGGACAAGAAGACAGGCAAAGCTGTTAACCTCTCAAGCTGGAAGC CATTATCAGTACAGAAGAATTGGCCATATCATGCTACTTATGTGATGCAATTCGGGTGCGTTCTACCCGTGGAAGAAAGTTTGCTTCCTCAGAAGCTGGC CAGATTCATAGTAACAACTAGATTCAAGATTACAGAAAGAGAGGAGTGTTTAGAATGGAGGGAAATCAGCATGAGAATTGAGAACATAGAAGGTGCCCAT GTCAATGGAAGGAGTAGTCTGATGATTCTGAATAAGGCCCTTTACAGCCAGCGCAGTACAAATCAGTTTAAAGTGGAAGAGGGATTAAGGAAGTATGAGA AACAGAAGAGAGAAATGATGAGGAGAAGGGAATCCAGGGAAGCTTTGGCTGACAGATTATTTACATTCATCGAGATCACTGTTTTTGTAATTTTATACGT TGCTCTTAGGTTGCTAGTTTAG
AA sequence Show only first row Show all	>Potri.001G452000.2 pacid=42788096 polypeptide=Potri.001G452000.2.p locus=Potri.001G452000 ID=Potri.001G452000.2.v4.1 annot-version=v4.1 MMERPICHLQSMNGELLTDIMSRVDGPALASVASTCSELRGIARDQSLWKKLCHSRWPSTALEEAEHLISGSVHGCFDKFYSDACPLVLYDEVANANSLK VLECAELNPRTSPSDLLSLIDVYYKNKCVLSRISDGIPEAVDIFKHGLVDSSWEMIADERQKWFLNYPFKLELMDLKDDEDDDDEALASPISSLNEAGKS RENLCKKLIEDLRLSWILVDKKTGKAVNLSSWKPLSVQKNWPYHATYVMQFGCVLPVEESLLPQKLARFIVTTRFKITEREECLEWREISMRIENIEGAH VNGRSSLMILNKALYSQRSTNQFKVEEGLRKYEKQKREMMRRRESREALADRLFTFIEITVFVILYVALRLLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36090			F-box family protein (.1)		Potri.001G452000 [exp]	0	1
AT4G32480			Protein of unknown function (D...		Potri.019G099600 [exp]	1.00	0.8606
AT1G28370	AP2_ERF	AtERF11	ERF domain protein 11 (.1)		Potri.007G043400 [exp]	2.00	0.7670
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Potri.018G146100 [exp]	8.71	0.7461
AT5G01380	Trihelix		Homeodomain-like superfamily p...		Potri.006G101400 [exp]	10.95	0.7053
					Potri.007G044750 [exp]	13.49	0.6972
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Potri.001G177400 [exp]	13.74	0.6754	IAA8.3
AT5G53050			alpha/beta-Hydrolases superfam...		Potri.012G017100 [exp]	18.65	0.6723
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.015G017500 [exp]	20.44	0.6885	GLT1.2
AT2G43330		ATINT1	inositol transporter 1 (.1)		Potri.007G126800 [exp]	20.61	0.6207
AT2G34930			disease resistance family prot...		Potri.015G025800 [exp]	27.62	0.6082

Compare expression of checked genes

Potri.001G452000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.