Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46870 198 / 5e-60 B3 NGA1 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) AT1G01030 192 / 3e-57 B3 NGA3 NGATHA3, AP2/B3-like transcriptional factor family protein (.1) AT3G61970 180 / 4e-53 B3 NGA2 NGATHA2, AP2/B3-like transcriptional factor family protein (.1) AT1G13260 157 / 7e-44 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT3G11580 153 / 9e-44 B3 AP2/B3-like transcriptional factor family protein (.1.2) AT1G68840 156 / 2e-43 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) AT4G01500 154 / 7e-43 B3 NGA4 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) AT5G06250 151 / 2e-42 B3 AP2/B3-like transcriptional factor family protein (.1.2) AT2G36080 147 / 4e-42 B3 ABS2, NGAL1 AP2/B3-like transcriptional factor family protein (.1.2) AT3G25730 147 / 3e-40 AP2_ERF EDF3 ethylene response DNA binding factor 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G149700 [exp] 533 / 0 AT2G46870 218 / 2e-67 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.002G181600 [exp] 214 / 8e-65 AT2G46870 264 / 6e-86 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.014G107200 [exp] 207 / 3e-62 AT2G46870 241 / 6e-77 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.008G117100 [exp] 160 / 4e-45 AT1G25560 422 / 6e-148 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.006G208100 [exp] 160 / 5e-45 AT2G36080 228 / 3e-73 AP2/B3-like transcriptional factor family protein (.1.2) Potri.010G129200 [exp] 160 / 1e-44 AT1G25560 441 / 1e-154 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.016G074500 [exp] 158 / 3e-44 AT2G36080 219 / 9e-70 AP2/B3-like transcriptional factor family protein (.1.2) Potri.018G109201 [exp] 117 / 4e-29 AT1G51120 286 / 8e-95 AP2/B3 transcription factor family protein (.1) Potri.006G186301 [exp] 109 / 2e-26 AT1G51120 287 / 3e-95 AP2/B3 transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041487 [exp] 161 / 3e-45 AT1G13260 416 / 8e-146 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10021326 [exp] 156 / 6e-44 AT5G06250 202 / 2e-63 AP2/B3-like transcriptional factor family protein (.1.2) Lus10034276 [exp] 151 / 3e-43 AT1G68840 233 / 4e-76 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) Lus10004226 [exp] 144 / 1e-38 AT5G06250 183 / 4e-55 AP2/B3-like transcriptional factor family protein (.1.2) Lus10021707 [exp] 137 / 2e-36 AT1G13260 369 / 1e-127 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10026212 [exp] 108 / 2e-27 AT1G51120 150 / 4e-44 AP2/B3 transcription factor family protein (.1) Lus10036282 [exp] 93 / 1e-20 AT1G50680 268 / 2e-88 AP2/B3 transcription factor family protein (.1) Lus10005264 [exp] 73 / 1e-13 AT2G33860 580 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10013942 [exp] 73 / 2e-13 AT2G33860 579 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10025226 [exp] 70 / 2e-12 AT4G32010 808 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G452200.1 pacid=42792501 polypeptide=Potri.001G452200.1.p locus=Potri.001G452200 ID=Potri.001G452200.1.v4.1 annot-version=v4.1 ATGGAATTTGGGACAGGTTTTAGTGAGGGAGATCAAATGAGTAGAGGAAAAGGACTCCCTTTTTCTTCTTACTCATCTTCGAATTCATCTCCTTCATCAT CTTCTTCTCAGCAAAGAAATCAGCTTGTTTTAGGCCAAATCTATGAAAACCACCAAATAGGTTCTTGGTTAGGTAACAAGTATGACCAGGTCGATCAAGA TACGTCAAGATTTAATGAGAGTGTAGCTGTAAACGCCGCTAAACTTGACCTTATGGATGTCAATGATGAAGAAGAAGGCGGCCGAGGAGAATCTAGTAGT GTGCAGGTGATAGAAAAGGAGCACATGTTTGATAAGGTTGTAACTCCAAGTGATGTAGGTAAGCTAAATCGCCTTGTGATACCAAAACAGCACGCAGAGA AGTACCTTCCTTTAGATTCATCATCGAATGAGAAGGGGCTTTTACTGAATTTTGAGGATATGAATGGTAAAGCTTGGAGATTCAGGTATTCATACTGGGG CAGTAGCCAGAGCTATGTTATGACTAAAGGTTGGAGCCGTTTTGTCAAGGAGAAGAAGCTTGATGCTGGTGATATTGTGTCTTTTCAAAGAGGGGTAGGT GAATTGGGTAAAGATCGTTTATACATTAATTGGAGGCGCCGGCCAGACGCACCGGACGACCCCTCTCGCCATCAACACCACTTTCACAACCACCATTTCT CAGCAATCCCTTGGAGCCCTTTACTCATGCGCCCACCAACAGTACCAGTCTTGCCAAGGGACCACCTTCACTTGTCTAATCCTAATAGAAATACTTGTTA CAAAGTTGGTGGTAGTTCTTATGGTTATGGTTATGGTAATTACAGCAATGTGGTAAACCCTTGTTCATCTTCTGGTTCAGTTTTTTACATGACATCATCA GCAGGAGCAGGAGCAGCATTAGAACCAGCCCCGCAACAGGTTGGCATGGGGATGGTGCAATGGCAGCTAGGAGGAGGTGGGGTTGTAGAGCCAGTGGTGT ATGAGTCGGTGCCGGTGGTCCAAGGGAAAGCAGCAGCAAAGAGACTAAGGTTGTTTGGTGTAAACATGGACTGCCCCATTACTGATCAATCCGATGACTA TGGTCACAAATTGTCCTCAACAACAGCAGCAGCAACAACATTACCTCATAATGCTACTATTGCATTGCAGCCTACTCCTCAACTCTCTTCACAGTCTTTG CAACATCCTCTCCACCAATTGAGACTCTATAGAGGCACCCCACTAGCAGCAATGCCACCCTCCACCACTCAATTTCTCCACAAAGGGAAGTCATCATCAC CATCATCATCCTCCATGTCCTTGGATTTAGATATCTGA
AA sequence Show only first row Show all	>Potri.001G452200.1 pacid=42792501 polypeptide=Potri.001G452200.1.p locus=Potri.001G452200 ID=Potri.001G452200.1.v4.1 annot-version=v4.1 MEFGTGFSEGDQMSRGKGLPFSSYSSSNSSPSSSSSQQRNQLVLGQIYENHQIGSWLGNKYDQVDQDTSRFNESVAVNAAKLDLMDVNDEEEGGRGESSS VQVIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYLPLDSSSNEKGLLLNFEDMNGKAWRFRYSYWGSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVG ELGKDRLYINWRRRPDAPDDPSRHQHHFHNHHFSAIPWSPLLMRPPTVPVLPRDHLHLSNPNRNTCYKVGGSSYGYGYGNYSNVVNPCSSSGSVFYMTSS AGAGAALEPAPQQVGMGMVQWQLGGGGVVEPVVYESVPVVQGKAAAKRLRLFGVNMDCPITDQSDDYGHKLSSTTAAATTLPHNATIALQPTPQLSSQSL QHPLHQLRLYRGTPLAAMPPSTTQFLHKGKSSSPSSSSMSLDLDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46870	B3	NGA1	NGATHA1, AP2/B3-like transcrip...		Potri.001G452200 [exp]	0	1
AT2G39210			Major facilitator superfamily ...		Potri.008G032901 [exp]	1.41	0.9166
AT2G46620			P-loop containing nucleoside t...		Potri.002G175600 [exp]	2.82	0.9131
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Potri.016G014300 [exp]	3.46	0.9152
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Potri.001G168200 [exp]	3.87	0.9096	Pt-RSH2.3
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Potri.008G010600 [exp]	7.74	0.9008
AT3G02150	TCP	TFPD, PTF1, TCP...	TEOSINTE BRANCHED1, CYCLOIDEA ...		Potri.004G116100 [exp]	8.36	0.9058
AT5G38710			Methylenetetrahydrofolate redu...		Potri.004G106400 [exp]	8.94	0.9054
AT4G39700			Heavy metal transport/detoxifi...		Potri.010G005300 [exp]	10.48	0.8973
AT2G14830			Regulator of Vps4 activity in ...		Potri.013G135700 [exp]	10.53	0.9142
AT1G75170			Sec14p-like phosphatidylinosit...		Potri.005G123200 [exp]	11.83	0.8811

Compare expression of checked genes

Potri.001G452200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.